Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1143 ATGGGAGTTGTCACTGTGGGAGAATTCAAGTCCAGCATTTCAGGGAAGAGGACTTTTCGTCCAAGTTCAAGCATAAGGCATGCCACTGAATGGCCTATATCTGATGTATCTAGTGACCTTACCATTGAAATAGGAGCTTCAAGCTTTGCACTTCACAAGTTTCCTCTAGTTTCTCGGAGTGGAAGAATTAGGAAACTTCTGTTAGAAGCAAAAGATTCTAGAGCTTTGCGTGTAAGTCTCCCAAATGTGCCAGGGGGTGCAGAGGCGTTTGAGCTTGCTGCAAAATTCTGTTATGGAATTAATGTTGAGTTCACCCTCTCCAATGTTGCTATGCTAAAATGTGCTTCCCATTTTCTCGAAATGACAGAGGAATTCGCGGAGAAAAATTTGGAGACGCGAGCGGAGGCGTATCTAAAGGAGACTGTGCTACCAAACATATCAAGCACAATATCTGTCCTTCACCGTTGCGAAACTCTTCTTCCCATTGCAGAAGAGATTAGCCTTGTTAGCAGGTTGATCAATGCAATTGCTAACAATGTGTGCAAAGAGCAGCTAACTTCTGGTTTACAAAAACTGGACCATAACCATTTTCCTTCTAAATCTATCTCAAACATGGAACCTGAGACACCCTTAGAATGGTGGGGAAAGTCACTCAATGTTCTTAATCTTGATTTCTTCCAAAGAGTTTTGTCTGCAATGAAGTCAAAGGGACTAAAACAAGAACTTATCAGCAAAATTTTGATAAACTATGCTCATAATTCTCTTCAAGGGATGGTTGTTAGGGACCCTCATGCTGTCAAAGGGAAACTTGACTTAGAATTACAGAAGAAACAAAGGGTCATTGTTGAAGCTATAGCTGGATTACTTCCAACTCAATCAAGGAAAAGCCCGGTTCCAATCGCGTTTCTCTCAAGTTTGTTGAAAGCTGCAATAGCAGCTTCAGCTTCTGGCTCTTGCAGAGCTGATTTGGAAAGGAGGATTGGTTTGCAACTTGACCAGGCAATTCTTGAAGACATTCTGATTCCAACAAACTCACATCAAAATAATACTCACAGCACCATTTATGACACAGATTCAATTTTGAGGATTTTTTCCATCTTCCTGAACTTGGATGATGAGGATGAAGATGATAACCACATGAGGGATGAAAATGAAATGATTTATGACTTTGAAAGTCCTGGTTCTCCAAAACAAAGCTCAATTCTGAAGGTATCCAAATTGCTTGACAACTATCTTGCTGAAGTAGCACTGGACTCAAACTTGTTGCCATCAAAGTTCACATCACTTGTGGAACTACTTCCAGATCATGCACGTATTGTAAGTGATGGACTCTATAGAGCTGTTGATATCTTCCTTAAGGTTCATCCAAACATGAAGGACTCAGAACGTTATCGTCTCTGCAAAACCATTGACTGCAACAAACTATCTCAAGAAGCCTGCAGCCACGCCGCACAAAACGAAAGACTACCAGTGCAGATGGCAGTGCAAGTTCTCTACTTCGAGCAAATCAGGCTCCGGAACGCCATGAACGGCGGAGGCAACAACCAATTCTTCTTCGGCGCCGGGTTCAACGCTCATCAATTCCCTCAACGTTCAGGGAGCGGTGCAGGAAGCGGAGCCATTTCTCCGAGAGACAACTACGCTTCAGTGAGAAGAGAAAACAGAGAGCTGAAGCTTGAGGTTGCGAGGATGAGAATGAGGCTCACTGATTTGGAGAAAGACCATGTTTCCATGAAGCAGGAGCTTGTGAAGTCTCACCCTGCGAACAAGCTGTTCAAATCTTTTACAAAGAAAATGAGCAAGCTCAATGCTCTGTTTCGGATGAATGGTATCAAGATGAATGGTGCTGGTTCTGAGAGCAGGTTTCCTTTTGCAAAGAGAAGGCGTCACTCAGTTTCATGA 1902 0.4285 MGVVTVGEFKSSISGKRTFRPSSSIRHATEWPISDVSSDLTIEIGASSFALHKFPLVSRSGRIRKLLLEAKDSRALRVSLPNVPGGAEAFELAAKFCYGINVEFTLSNVAMLKCASHFLEMTEEFAEKNLETRAEAYLKETVLPNISSTISVLHRCETLLPIAEEISLVSRLINAIANNVCKEQLTSGLQKLDHNHFPSKSISNMEPETPLEWWGKSLNVLNLDFFQRVLSAMKSKGLKQELISKILINYAHNSLQGMVVRDPHAVKGKLDLELQKKQRVIVEAIAGLLPTQSRKSPVPIAFLSSLLKAAIAASASGSCRADLERRIGLQLDQAILEDILIPTNSHQNNTHSTIYDTDSILRIFSIFLNLDDEDEDDNHMRDENEMIYDFESPGSPKQSSILKVSKLLDNYLAEVALDSNLLPSKFTSLVELLPDHARIVSDGLYRAVDIFLKVHPNMKDSERYRLCKTIDCNKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGGNNQFFFGAGFNAHQFPQRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVKSHPANKLFKSFTKKMSKLNALFRMNGIKMNGAGSESRFPFAKRRRHSVS* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1143 633 Gene3D Potassium Channel Kv1.1; Chain A 23 144 IPR011333 -
Lja5g1143 633 PANTHER OS12G0117600 PROTEIN 25 626 IPR043454 -
Lja5g1143 633 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Lja5g1143 633 Pfam NPH3 family 212 480 IPR027356 -
Lja5g1143 633 ProSiteProfiles NPH3 domain profile. 212 504 IPR027356 -
Lja5g1143 633 SUPERFAMILY POZ domain 22 123 IPR011333 -
Lja5g1143 633 Coils Coil 547 581 - -
Lja5g1143 633 Pfam BTB/POZ domain 37 139 IPR000210 GO:0005515
Lja5g1143 633 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1143 Lja-Chr5 11508095 11512604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1143 1 454 EF-hand Containing Proteins AT2G47860 59.259 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1143 - - gmx:100814622 1032.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1143 5 11508095 11512604 Lja5g1143 5 11508095 11512604 ECH
Lja1g0340 1 2957769 2962405 Lja5g1143 5 11508095 11512604 PCT