Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0340 ATGGGAGTTGTAACTCTTGGTGAATTGAAGCCTAGCATTTCTGGGAGAAGAACATTTCGTCCAAGTTCAAGCATAAGACATGCCACTGAATGGCCAATTTCTGATGTCTCTAGTGATCTCACCATAGAAGTAGGAGCTTCAAACTTTGCACTTCATAAGTTTCCTCTTGTTTCTAGGAGTGGAAGAATTCGGAAGTTACTCTCAGAAGCAAAAGTTTTGCGCGTAAGTCTCCAAAATGTGCCAGGTGGTGCAGAGGCGTTTGAGCTAGCTGCCAAATTCTGCTATGGAATCAACATTGACTTCACCCTCTCAAATGTTGCTATGCTACGTTGCACATCCCATTATCTTGAAATGACAGAAGAATTTGCAGAAAAAAACTTGGAAACCAGAGTTGAAGCATATCTAAAGGAGACAGTGCTCCCAAACACATCAAGCACAATTTCTGTTCTTCATAGTTGTGAGACTCTTCTTCCCATATCAGAAGAAATCAACCTTGTCAACAGGCTAATCAATGCGATTGCAAATAACGCTTGCAAAGAGCAACTTACTTCTGGCTTGCAAAAACTTGACCACACTTTCCCTTCTAAAACCACATCAACCATGGAACCAGAAACACCCTCTTGGGGAAAGTCTTTCAATGTTCTCAACCTTGATTTCTTCCAAAGAGTTGTATCTGTTATGAAGTCAAAAGGGTTGAAACAAGACATGATCAGCAAAATTTTGATAAACTATGCTCAAAATTCTCTTCAAGGGATTTGTGTTAGGGACCCCAATGTGGTAAAAGGAAGTGCACTTGACATGGAGTTGCAGAAGAAACAAAGGGTCAGTGTTGAAGCTATAGTTGGTTTACTCCCAACTCAATCAAGGAAGAGTCCAGTTCCAATGGCATTTCTCTCTTGTCTATTAAAAGCTGCAATAGCAACATCAGCATCAACTCCTTGTAGATGTGATTTAGAGAGGCGAATCGGTCTGCAACTTGACCAGGCAATACTTGAAGACATTCTAATTCCAACAAATTCACCTCAAAATTCCCACAGCACAATGTATGATACAGATTCCATTTTGAGGATCTTTTCTACTTTTCTAAACTTGGATGATGATGATGATGAGGACAATGATGATGAAGATAGTCACTTCAGAGATGAAAGCCAAATGATGTATGAGTATGGCTTTGAGAGTCCTGGATCTCCAAAACAAAGCTCAATTCTCAAGGTGTCAAAGTTATTGGACAACTATCTTGCTGAAGTAGCACTGGACTTGAACTTGTTACCATCAAAATTCATAGCCCTTGTGGAGCTACTTCCAGATCATGCACGTGTTGTCAGTGATGGACTCTATAGAGCTGTTGATATCTTTCTTAAGGTTCATCCAAACATGAAGGACTCAGATAGGTATCGCCTATGCAAAACCATAGATTGTCAGAAACTGTCTCAAGAAGCATGCAATCATGCAGCACAAAATGAAAGGCTACCAATGCAGATTCTGGTTCAAGTTCTTTACTTTGAGCAAATCAGGCTCCGCAATGCCATGAATGGAGAAGGAGGACACAGTAATCAGATCTTCTTTGGTGGTGGGTTTCAGGGTAATCAACAATTCCCTCAACGTTCAGGAAGTGGTGTAGGAAGTGGAGCCATTTCGCCAAGAGATAATTATGCCTCGGTGAGAAGAGAGAACAGAGAGCTGAAGCTTGAGGTTTCAAGAATGAGAATGAGGCTCACTGACTTGGAGAAAGACCATGTTTCCATAAAGCAGGAGTTTGTGAAGCCCCACACTGCTAACAGGCTCTTCAAAGCGTTCACCAGAAAGCTAAGCAAGCTCAATAATGCTCTGTTCCGGAGAAAGAGTGTTGGTAATGGTGGCAGAGAAAGAGAACATAATAGTCCACAGCAAACTCGGTTCCCTTTTCCAAAGCGAAGGTGCCACTCAGTTTCATAA 1935 0.4145 MGVVTLGELKPSISGRRTFRPSSSIRHATEWPISDVSSDLTIEVGASNFALHKFPLVSRSGRIRKLLSEAKVLRVSLQNVPGGAEAFELAAKFCYGINIDFTLSNVAMLRCTSHYLEMTEEFAEKNLETRVEAYLKETVLPNTSSTISVLHSCETLLPISEEINLVNRLINAIANNACKEQLTSGLQKLDHTFPSKTTSTMEPETPSWGKSFNVLNLDFFQRVVSVMKSKGLKQDMISKILINYAQNSLQGICVRDPNVVKGSALDMELQKKQRVSVEAIVGLLPTQSRKSPVPMAFLSCLLKAAIATSASTPCRCDLERRIGLQLDQAILEDILIPTNSPQNSHSTMYDTDSILRIFSTFLNLDDDDDEDNDDEDSHFRDESQMMYEYGFESPGSPKQSSILKVSKLLDNYLAEVALDLNLLPSKFIALVELLPDHARVVSDGLYRAVDIFLKVHPNMKDSDRYRLCKTIDCQKLSQEACNHAAQNERLPMQILVQVLYFEQIRLRNAMNGEGGHSNQIFFGGGFQGNQQFPQRSGSGVGSGAISPRDNYASVRRENRELKLEVSRMRMRLTDLEKDHVSIKQEFVKPHTANRLFKAFTRKLSKLNNALFRRKSVGNGGREREHNSPQQTRFPFPKRRCHSVS* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0340 644 Coils Coil 551 578 - -
Lja1g0340 644 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 622 - -
Lja1g0340 644 Gene3D Potassium Channel Kv1.1; Chain A 23 129 IPR011333 -
Lja1g0340 644 PANTHER OS12G0117600 PROTEIN 25 622 IPR043454 -
Lja1g0340 644 ProSiteProfiles NPH3 domain profile. 206 505 IPR027356 -
Lja1g0340 644 MobiDBLite consensus disorder prediction 614 644 - -
Lja1g0340 644 SUPERFAMILY POZ domain 22 120 IPR011333 -
Lja1g0340 644 ProSiteProfiles BTB domain profile. 38 103 IPR000210 GO:0005515
Lja1g0340 644 Pfam NPH3 family 208 481 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0340 Lja-Chr1 2957769 2962405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0340 1 455 EF-hand Containing Proteins AT2G47860 59.916 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0340 - - gmx:100776688 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0340 1 2957769 2962405 Lja1g0340 1 2957769 2962405 ECH
Lja1g0340 1 2957769 2962405 Lja5g1143 5 11508095 11512604 PCT