Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1129 ATGCAGAGAGTAGCGTTCTCCTTACCGGAGGAGGTACTCGAGCACGTGTTCTCGTTCATCGATAACGACAAGGACAGGAGCTCGATCTCGCTGGTGTGCAGGTCATGGTACGAGATCGAGCGATGTTGCCGGAGAAACGTCTTCGTCGGAAACTGCTACGCCGTCAGCCCGGAGATGGTGGTGAAGCGGTTCCCGAGGGTGAGATCCGTCACGCTCAAAGGGAAGCCACACTTCGCTGACTTCAATCTGGTTCCTGACGGTTGGGGCGGTTACGTCTCGCCATGGATCAAGGCCATGGCTGCTGCTTGTCCCTCGCTGCTTGAGATCAGGCTCAAGAGGATGGTTGTTACCGATGATTGCTTGGACCTTATTGCCAAGTCGTTCAAAAACTTCAGGGTGTTGGTCCTGATCTCTTGTGAGGGTTTCACTACTCATGGACTCGCTGCCATTGCTGCCAATTGCAGGAATTTGAGGGAGCTGGATTTGCGGGAGAGTGAAGTGGAGGACATTTGTGGGCACTGGCTAAGCCATTTTCCAGATTCCTACAATTCGTTGGAATCGCTGAACATCTCTTGCTTAAGCAATGAGGTGAATTTGCCGGCGCTAGAGCGCTTGGTTAGTAGGTGCCCCAACCTGCAAACGCTCCGCCTTAATCGTGCTGTGCCCTTGGATAGGCTTACCAATCTGCTTCGCGGGGCTCCTCAGCTGGTTGAGTTGGGGACTGGAGCTTACACAGCTGAGATGCGGCCGGAGGTCCTCGCGAACCTGACAGAAGCGTTTTCTGGATGTAAGCAATTGAAGGGCTTGTCTGGCTTTTGGGATGTGCTCCCATCCTACCTTCCAGCTGTTTATCCTGTCTGCTCTGGGCTGACATCACTGAACTTGAGTTATGCTACCATCCAAAGCCCTGATCATATCAAACTTGTTAGTCAATGTGGGAGTTTGCAGCGTTTATGGGTGTTGGATTACATAGAAGATGCTGGCCTTGATGTGCTTGCTGCATCATGTAAGGATCTGAGGGAGTTGAGGGTGTTTCCTTCGGATCCATTTGGGTTAGAGCCAAATGTAGCATTGACCGAGGAAGGTCTTATTTCTGTGTCTGAAGGCTGCCCCAAGCTACAGTCAGTTCTATATTTTTGTCGTCAAATGTCCAATGCTGCCCTAAATACAATTGCTCAGAACAGGCCTAATATGACTCGTTTTCGACTATGTATTATTGAGCCTCGAACCCCTGATTATCTTACCCACCAACCTTTGGATGCTGGTTTTGGAGCTATTGTTCAGCATTGCAAGAATCTACAGCGCCTTTCCCTCTCTGGGCTTCTTACTGACCGTGTCTTCGAGTATATTGGTACTTATGCGAAGAAGCTTGAGATGCTTTCTGTAGCTTTTGCTGGAGACAGTGATTTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTCAGGAAGCTGGAGATCAGGGACTGCCCATTTGGTGATAAGGCCCTATTGGCCAACGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCGTGCCTAGTGAGTTATGGTGCATGTAAGCTGCTGGGACAAAAAATGCCGAGACTTAATGTTGAAGTCATTGATGAAAGAGGACCTCCAGATACAAGGCCAGAGAGTAGTCCTGTTGAGAAGCTATATATATACAGAACCATTTCTGGGCCAAGAGTGGACATGCCTGGCTACGTGTGGACTATGGAAGATGATTCTGCATACCTTAAATGA 1752 0.4971 MQRVAFSLPEEVLEHVFSFIDNDKDRSSISLVCRSWYEIERCCRRNVFVGNCYAVSPEMVVKRFPRVRSVTLKGKPHFADFNLVPDGWGGYVSPWIKAMAAACPSLLEIRLKRMVVTDDCLDLIAKSFKNFRVLVLISCEGFTTHGLAAIAANCRNLRELDLRESEVEDICGHWLSHFPDSYNSLESLNISCLSNEVNLPALERLVSRCPNLQTLRLNRAVPLDRLTNLLRGAPQLVELGTGAYTAEMRPEVLANLTEAFSGCKQLKGLSGFWDVLPSYLPAVYPVCSGLTSLNLSYATIQSPDHIKLVSQCGSLQRLWVLDYIEDAGLDVLAASCKDLRELRVFPSDPFGLEPNVALTEEGLISVSEGCPKLQSVLYFCRQMSNAALNTIAQNRPNMTRFRLCIIEPRTPDYLTHQPLDAGFGAIVQHCKNLQRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYGACKLLGQKMPRLNVEVIDERGPPDTRPESSPVEKLYIYRTISGPRVDMPGYVWTMEDDSAYLK* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1129 583 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
Lja5g1129 583 SMART fbox_2 8 47 IPR001810 GO:0005515
Lja5g1129 583 SMART LRR_CC_2 128 153 IPR006553 -
Lja5g1129 583 SMART LRR_CC_2 103 127 IPR006553 -
Lja5g1129 583 SMART LRR_CC_2 479 503 IPR006553 -
Lja5g1129 583 SMART LRR_CC_2 430 453 IPR006553 -
Lja5g1129 583 SMART LRR_CC_2 370 394 IPR006553 -
Lja5g1129 583 SMART LRR_CC_2 154 191 IPR006553 -
Lja5g1129 583 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 5 576 - -
Lja5g1129 583 Pfam F-box 7 46 IPR041567 -
Lja5g1129 583 Gene3D - 1 44 - -
Lja5g1129 583 SUPERFAMILY F-box domain 7 39 IPR036047 GO:0005515
Lja5g1129 583 Gene3D Ribonuclease Inhibitor 45 575 IPR032675 -
Lja5g1129 583 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 5 576 - -
Lja5g1129 583 SUPERFAMILY RNI-like 30 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1129 Lja-Chr5 11322681 11325588 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1129 K14485 - gmx:100809794 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1129 5 11322681 11325588 Lja5g1129 5 11322681 11325588 ECH
Lja1g0566 1 5136329 5139057 Lja5g1129 5 11322681 11325588 PCT