Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0566 ATGAAGAGAATGGTGTGTTCGTTCCCTGAGGAAGTGCTGGAGCACGTGTTTTCGTTCATTCAGGTCGACACTGACCGGAACGCAATCTCGCTGGTGTGCAAGTCGTGGTACGAGATCGAACGGTGGTGCAGGAGGAAAGTCTTCGTCGGGAACTGCTACGCGGTCAGCCCGATGATTGTCATCAAGCGCTTCCCGGAGGTGAGATCCATCGCGCTCAAAGGGAAGCCGCACTTCGCGGACTTCAATTTGGTTCCGGAAGGTTGGGGCGGTTACGTGTGCACGTGGATCGCAGCCATGTCACGTGCTTTTCCTTGGCTTGAGGAGATCAGGCTCAAGAGGATGGTCATCAGCGACGAGAGCTTGGAGCTCATCGCTAAATCCTTCAAGAACTTCAAGGTGCTGGTTCTTACCTCGTGTGAGGGTTTCACTACTGATGGACTTGCTGCCATTGCTGCCAATTGCAGGAATTTGAGGGAGTTGGACTTGCAGGAAAGTGAGGTGGAGGACCTTAGTGGGCATTGGCTAAGCCATTTCCCTGATTCCTACACATCATTAGTTTCACTTAACATCTCTTGTTTAAGCAATGAGGTGAGTTTGTCTGCACTAGAGCGCCTGCTTGGTAGGTGTCCCAACATGAAGACCCTTCGCCTCAATCGTGCTGTGCCGCTTGACAGATTACCCAACCTACTTCGCCAGTGTCCTCAGCTGGTTGAGTTAGGGACAGGAGTCTACTCAGCTGAGATGAGACCAGATGTGTTCTCAAACCTGGCAGCAGCATTTTCTGGGTGCAAGCAATTGAAGAGCTTGTCTGGCTTTTGGGACGTGCTCCCATCCTACCTTCCAGCTGTTTACCCTGTCTGCTCTGGGCTAACATCACTAAACTTGAGTTATGCTACTGTCCAAAGCTCTGATCTTGTCAAGCTTATCAGTCAATGCCCAAGTTTGCAGCGGTTATGGGTGCTGGATTTCATAGAAGATGCTGGTCTTGATGTCCTTGCTGCTTCATGCAAGGATCTTAGGGAGCTGAGGGTGTTTCCATCTGATCCATTTGGTTTCGAACCAAATGTTGCATTGACAGAAAGGGGCCTAGTCTCTGTATCTGAAGGCTGCCCCAAGCTCCAATCAGTTTTATATTTTTGTCGTCAATCAGAGATGGTCTTTGATAGAATGATATTTATTGCGCACACATAA 1191 0.4962 MKRMVCSFPEEVLEHVFSFIQVDTDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMIVIKRFPEVRSIALKGKPHFADFNLVPEGWGGYVCTWIAAMSRAFPWLEEIRLKRMVISDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVSLNISCLSNEVSLSALERLLGRCPNMKTLRLNRAVPLDRLPNLLRQCPQLVELGTGVYSAEMRPDVFSNLAAAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSGLTSLNLSYATVQSSDLVKLISQCPSLQRLWVLDFIEDAGLDVLAASCKDLRELRVFPSDPFGFEPNVALTERGLVSVSEGCPKLQSVLYFCRQSEMVFDRMIFIAHT* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0566 396 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 6 383 - -
Lja1g0566 396 Gene3D - 1 44 - -
Lja1g0566 396 SUPERFAMILY F-box domain 4 39 IPR036047 GO:0005515
Lja1g0566 396 SMART fbox_2 8 49 IPR001810 GO:0005515
Lja1g0566 396 Pfam F-box 6 46 IPR041567 -
Lja1g0566 396 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
Lja1g0566 396 SUPERFAMILY RNI-like 83 344 - -
Lja1g0566 396 Gene3D Ribonuclease Inhibitor 45 385 IPR032675 -
Lja1g0566 396 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 6 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0566 Lja-Chr1 5136329 5139057 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0566 K14485 - gmx:100779021 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0566 1 5136329 5139057 Lja1g0566 1 5136329 5139057 ECH
Lja1g0566 1 5136329 5139057 Lja5g1129 5 11322681 11325588 PCT