Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja5g1113 | ATGACGGGCCTTGTAATGGTGACCAAAGGCGGTGGATGCGGTGGCAAGAGAACCAGAGCTTCTCGCACCGCCGAAGAGGAACAAGACCGCCAGAACCAGCTCTCACTCGTCGCGCTTCTCCTCGCGGCGCTCAGGAAATCCATGGTGGCTTGCAGAGTCGACCGACCCGATGAAGCGATCTCCACAGTTCACCAAATGGAGATCGGATGGCCTACCGACGTTCAGCACATCACTCATGTCACCTTCGATCGCTTCAATGGCTTCCTGGGTCTTCCTGTTGAGTTTGAGGTTGAGATCCCGGGTCGGGTTCCCAGTGCTAGTGTAAGTGTATTTGGCGTCTCTGCAGAATCTATGCAGTGTTCTTATGATTCAAAAGGGAACAGTGTCCCTACAATTCTCTTACTAATGCAGGAACGTTTATACTCCCAGGGAGGCTTAAAGGCTGAAGGAATATTTCGCATAAACCCAGAAAATAGTCAAGAGGAGCATGTGAGGAACCAGTTGAATAGAGGCATTGTGCCAGATGACATTGATGTCCACTGCTTGGCGGGACTAATTAAAGCCTGGTTCCGAGAGCTTCCTCAAGGAGTGCTGGATGGACTTTCCCCTGAACAAGTTCTGCAGTGTAACACCGAAGAAGAATCTATCGAGCTTGTGAAGCAGCTGAAGCCAACCGAGACTGCCTTACTCAACTGGGCTATTGATCTCATGGCCGATGTTGTAGAAGATGAGGAATGTAACAAAATGAACGCAAGAAACATTGCAATGGTTTTTGCTCCAAACATGACTCAGATGTCTGATCCTCTAACCGCCCTGATGCATGCGGTTCAAGTGATGAACTTACTCAAGACATTGATAATGAAGACACTTAGAGAACGTGAAGAAACAGCAACAGGTGGATATTCACCCATGTCCTTTCATTCATCAGATCGCCGGTCTGAGGCTGAATATGACAGTCAGCGAGAAATGGACACAAGCGGTGAGCTGAGAGGGGCCAAATCAGATTGTGGTTCCCACTACAGCCATAGCAGTGAAGAGGAAGTGGAGGCTGAATCTCTGAGTGAGATCGAAGAACGCTTCTTGAAGCAGTTGGATGAGAACACAAAAGGATTCTCAGAAGAACCTGCAGCTTCTTTGCAAGAGTATGTTAACCCCAGTAACTCTGGCTATAGCGTGGAACCTGCTGCATCAAATACTGATAGCAAAACAGGGAAACCTTGCTTGAGGACCGGTTTGGATTCAAGTATTGACTCAAGTAGGGCATGGACAGGCACCAAAGAAGTGGAGATGATGGATAAATTTACAGATTCGGTTCCACCAGTGCCGCTGGTTGCATCTAGTTAA | 1344 | 0.4821 | MTGLVMVTKGGGCGGKRTRASRTAEEEQDRQNQLSLVALLLAALRKSMVACRVDRPDEAISTVHQMEIGWPTDVQHITHVTFDRFNGFLGLPVEFEVEIPGRVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRNQLNRGIVPDDIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTEEESIELVKQLKPTETALLNWAIDLMADVVEDEECNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETATGGYSPMSFHSSDRRSEAEYDSQREMDTSGELRGAKSDCGSHYSHSSEEEVEAESLSEIEERFLKQLDENTKGFSEEPAASLQEYVNPSNSGYSVEPAASNTDSKTGKPCLRTGLDSSIDSSRAWTGTKEVEMMDKFTDSVPPVPLVASS* | 448 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja5g1113 | 447 | MobiDBLite | consensus disorder prediction | 383 | 412 | - | - | |
| Lja5g1113 | 447 | MobiDBLite | consensus disorder prediction | 339 | 354 | - | - | |
| Lja5g1113 | 447 | Gene3D | CRIB domain | 63 | 99 | IPR036936 | - | |
| Lja5g1113 | 447 | SUPERFAMILY | GTPase activation domain, GAP | 109 | 287 | IPR008936 | GO:0007165 | |
| Lja5g1113 | 447 | MobiDBLite | consensus disorder prediction | 309 | 329 | - | - | |
| Lja5g1113 | 447 | Pfam | P21-Rho-binding domain | 67 | 96 | IPR000095 | - | |
| Lja5g1113 | 447 | MobiDBLite | consensus disorder prediction | 294 | 354 | - | - | |
| Lja5g1113 | 447 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Lja5g1113 | 447 | MobiDBLite | consensus disorder prediction | 383 | 405 | - | - | |
| Lja5g1113 | 447 | CDD | CRIB | 66 | 106 | - | - | |
| Lja5g1113 | 447 | PANTHER | RHO GTPASE ACTIVATION PROTEIN-RELATED | 1 | 413 | - | - | |
| Lja5g1113 | 447 | ProSiteProfiles | Rho GTPase-activating proteins domain profile. | 113 | 294 | IPR000198 | GO:0007165 | |
| Lja5g1113 | 447 | SMART | RhoGAP_3 | 127 | 290 | IPR000198 | GO:0007165 | |
| Lja5g1113 | 447 | Pfam | RhoGAP domain | 130 | 264 | IPR000198 | GO:0007165 | |
| Lja5g1113 | 447 | PANTHER | MKIAA1688 PROTEIN | 1 | 413 | IPR044785 | GO:0005096 | |
| Lja5g1113 | 447 | Gene3D | Rho GTPase activation protein | 100 | 294 | IPR008936 | GO:0007165 | |
| Lja5g1113 | 447 | SMART | PBD_5 | 68 | 102 | IPR000095 | - | |
| Lja5g1113 | 447 | CDD | RhoGAP | 130 | 286 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja5g1113 | Lja-Chr5 | 11185085 | 11188078 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja5g1113 | - | - | gmx:100807134 | 687.182 |
Event-related genes