Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0579 ATGACAGGGCCAGTGATGGTGACAAGGGGTGGAGGATGCGGTGGTGGGAAGGGAAGGAGAGGAGGCAGAGACGCCGTCGAAGAAGCAGAGCAGAACCAGGGGTCGCCGGCGGCGTTTTTATTGGCGGCTCTGAAGAAATCTATGGTGGCGTGCAGTGTCGACAGTCCTGATGATGTCATCTCCGCCGTGCATCCCATGGAGATTGGATGGCCTACCAACGTTAAGCACGTCACTCACGTCACCTTCGATCGCTTCAATGGCTTCCTGGGTCTTCCTCTTGAGTTAGAGGTTCATGTACCTGCTCCTGTTCCCAGTGCTAGTGTTAGTGTGTTTGGCGTCTCAGCTGAATCAATGCAGTGTTCTTATGATTCAAAGGGAAACAGTGTCCCCACTATTCTGCTGCTAATGCAGGAGCGGTTATACTCACAGGGGGGCCTTATGGCTGAAGGTATATTCCGCATAAACCCGGAGAACGGTCAAGAGGAGCATTTGAGGGACCAGTTGAATAGGGGCGTTGTGCCGGATAACATTGATGTCCATTGCTTGGCAGGGCTAATTAAAGCATGGTTCAGAGAGCTTCCTTCTGGAGTGCTTGATGGACTTTCTCCTGAACAAGTTCTTGAGTGCAACACAGAAGAAGAATTTGTTCAGCTTGTGAAGCAGCTCAAGCCAACTGAGTTAGCCTTACTTAACTGGGCTCTTGATCTCATGGCTGATGTTGTGGAAGAAGAGGAGCATAACAAAATGGATGCTAGGAATATAGCAATGGTTTTTGCTCCAAATATGACTCAGATGTCTGATCCACTAACTGCTCTGATGCACGCGGTCCAAGTAATGAATTTACTGAAGACCCTGATACTGAAGACACTTAGTGAACGTGAAGAAGCAACAACAGCAGGGTATTCATCCATGTCATCTCATTCATCAGATCGCCAATCTGAGGATGAATATGATAGTCAGCTTGAAATGTATACCAGTGCTGAATTGAGAGGGAGCCAGTCAGATTGTGATGATCATGTTAACAATAATAGCCTTAACAGTGAAGAGGAAGTGGATTCTGCGTCTGTAAGTGAGATAGAGGAATGCTTCTTGAAGCAGTTGAATGAGAACAAACAAGGAGGATTCGCAGAGGAACCTGCAAGGAGTACTTGCTCTGGCTATAACCTGGAATCTGCTGTATCATTTACCGATGCGAAACCTGATAATTCGTGCTCAAGTTCTTATGAAGATGACTCGGGAGCAACTCTGTCGGCTGAGGGATCGAGTGCGGAATCAAGTAGTCCATCAATTGGAAGTACATACTGCACCAATGATGTGGAAATGATGGATAAGTTTGCAGATTGTGTTTCACTAGTGCCACTGTTTGCATCAAGTTAA 1377 0.4691 MTGPVMVTRGGGCGGGKGRRGGRDAVEEAEQNQGSPAAFLLAALKKSMVACSVDSPDDVISAVHPMEIGWPTNVKHVTHVTFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRDQLNRGVVPDNIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLMADVVEEEEHNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLSEREEATTAGYSSMSSHSSDRQSEDEYDSQLEMYTSAELRGSQSDCDDHVNNNSLNSEEEVDSASVSEIEECFLKQLNENKQGGFAEEPARSTCSGYNLESAVSFTDAKPDNSCSSSYEDDSGATLSAEGSSAESSSPSIGSTYCTNDVEMMDKFADCVSLVPLFASS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0579 458 MobiDBLite consensus disorder prediction 399 433 - -
Lja1g0579 458 PANTHER MKIAA1688 PROTEIN 1 458 IPR044785 GO:0005096
Lja1g0579 458 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g0579 458 SMART RhoGAP_3 127 290 IPR000198 GO:0007165
Lja1g0579 458 SUPERFAMILY GTPase activation domain, GAP 109 287 IPR008936 GO:0007165
Lja1g0579 458 Pfam P21-Rho-binding domain 67 95 IPR000095 -
Lja1g0579 458 Gene3D Rho GTPase activation protein 100 294 IPR008936 GO:0007165
Lja1g0579 458 CDD RhoGAP 130 280 - -
Lja1g0579 458 ProSiteProfiles Rho GTPase-activating proteins domain profile. 113 294 IPR000198 GO:0007165
Lja1g0579 458 MobiDBLite consensus disorder prediction 325 352 - -
Lja1g0579 458 Gene3D CRIB domain 64 99 IPR036936 -
Lja1g0579 458 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 1 458 - -
Lja1g0579 458 MobiDBLite consensus disorder prediction 298 353 - -
Lja1g0579 458 SMART PBD_5 68 102 IPR000095 -
Lja1g0579 458 ProSiteProfiles CRIB domain profile. 68 81 IPR000095 -
Lja1g0579 458 Pfam RhoGAP domain 130 264 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0579 Lja-Chr1 5267765 5271161 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0579 - K20642 gmx:100812700 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0579 1 5267765 5271161 Lja1g0579 1 5267765 5271161 ECH
Lja1g0579 1 5267765 5271161 Lja5g1113 5 11185085 11188078 PCT