Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1105 ATGGCGTTGAAGCGCGTGGCTCTGTTTTTCTTCTTCTGCTTCATGCAAACGCACCTTCATCTTCATGTCCTCGCCATTTTGGATCCCTCTGATTTCCTCGCTCTGCAATCCATTCGTAAGTCCCTCGAAGACATGCCTGGTTCTGAGTTCTTCTCCACCTGGGATTTCACCGCCGATCCTTGCAGTTTCTCCGGCGTTTACTGCGATTCCGACAAGGTCATCGCCCTCAACCTCGGCGACCCGAGAGCCGGTTCACCCGGCTTAACCGGCCGCCTCGACGCGGCCATCGGCAAGCTCTCCTCTCTCGCTGAGTTCACCGTCGTTCCTGGAAGAATCTACGGTCCTCTGCCTCAAACGCTACCCGATTTGAAGAATCTCAGGTTCCTCGGCGTCAACCGGAACTTCATCTCCGGCGAGATTCCGCCAGGGCTCGGTAATCTCCGCAGCCTAAGGACCATCGACTTGAGCTACAACCAGCTCACCGGAAGCCTCCCTCAGTCTGTTGGTTCCTTACCGGAGCTAACCAACCTGATGCTCTGCCACAACCGCCTCTCCGGTTTTCTTCCCCGGTTCGAGTCTCAGAAATTAACTCGGCTCGACCTCAAGCACAACGCGCTCACCGGTTCGCTCGCTCCGAGTTCACTTCCTCCGTCTCTCCAGTATCTCTCCCTGGCGTGGAACAATCTCACCGGACCGGTGGACCGGCTACTATCCCGGCTCGACCAGTTAAACTACCTAGACCTCAGCTTGAACCAGTTCACCGGCCCGGTCCCGGCCCGGATCTTCTCATTCCCGCTGACCAACCTCCAGCTAGAAAGGAACCAGTTCTACGGCCCGGTTCAACCGGTGGATAGAGTCGCGATCCCCACCGTGGATCTCAGCTACAACCGATTCTCCGGTCAGATATCGCCGATGCTGGCGAGTGTGCAGAGTTTGTACCTGAACAACAACCGGTTCTCGGGTCGGGTTCCGGCTAGCTTTGTTGACCGGTTGCTGGATGCGAGCATTCAGATACTGTATTTGCAGCACAACTACCTCACCGGGATTGAGATAAGCCCCACGGCGGTGATTCCGGGGAGAAGCTCGCTGTGTCTGCAGTACAATTGCATGGTGCCGCCGGTGGAGGCGCCGTGTCCGTTGAGAGCTGGGAATCAGAAAACAAGGCCCACTACACAGTGCAACCAGTGGAAAGGATAG 1197 0.5673 MALKRVALFFFFCFMQTHLHLHVLAILDPSDFLALQSIRKSLEDMPGSEFFSTWDFTADPCSFSGVYCDSDKVIALNLGDPRAGSPGLTGRLDAAIGKLSSLAEFTVVPGRIYGPLPQTLPDLKNLRFLGVNRNFISGEIPPGLGNLRSLRTIDLSYNQLTGSLPQSVGSLPELTNLMLCHNRLSGFLPRFESQKLTRLDLKHNALTGSLAPSSLPPSLQYLSLAWNNLTGPVDRLLSRLDQLNYLDLSLNQFTGPVPARIFSFPLTNLQLERNQFYGPVQPVDRVAIPTVDLSYNRFSGQISPMLASVQSLYLNNNRFSGRVPASFVDRLLDASIQILYLQHNYLTGIEISPTAVIPGRSSLCLQYNCMVPPVEAPCPLRAGNQKTRPTTQCNQWKG* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1105 398 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Lja5g1105 398 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Lja5g1105 398 SMART LRR_typ_2 306 329 IPR003591 -
Lja5g1105 398 SMART LRR_typ_2 147 170 IPR003591 -
Lja5g1105 398 SMART LRR_typ_2 240 264 IPR003591 -
Lja5g1105 398 SMART LRR_typ_2 171 193 IPR003591 -
Lja5g1105 398 SMART LRR_typ_2 123 146 IPR003591 -
Lja5g1105 398 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Lja5g1105 398 Pfam Leucine Rich repeat 193 208 IPR001611 GO:0005515
Lja5g1105 398 SUPERFAMILY L domain-like 28 370 - -
Lja5g1105 398 PANTHER LRR RECEPTOR-LIKE KINASE 10 395 - -
Lja5g1105 398 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 10 395 - -
Lja5g1105 398 Gene3D Ribonuclease Inhibitor 193 371 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1105 Lja-Chr5 11094276 11095846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1105 34 348 Receptor kinase-like Gene Family AT5G62230 30.887 4.67e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1105 - - gmx:100800224 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1105 5 11094276 11095846 Lja5g1105 5 11094276 11095846 ECH
Lja1g1179 1 12084575 12086497 Lja5g1105 5 11094276 11095846 PCT