Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1179 ATGGACATTGCTTCTTCTTCCTGTTATTCTCTGCTTTTCCTCTGTTTCCTTCATCAATCTGCACAAGCCTTATTGGACCCCACCGATTTCTTGGCCCTTCAATCCATTCGCAAGGCGCTTCACGATGTACCAGGTTCCAGTTTCTTCTCTTCTTGGGACTTCACTGCTGATCCTTGCAACTTCCCCGGCGTTCTCTGTGATTCTGATAAGGTCATCGCACTCAGCCTCGGCGAACCGCGAGCTGGTTCGCCGGGTCTCACCGGGAAACTAGACAATGCTGTCGGAAAGTTGTCTTCCCTCGCTGAATTCACTGTTGTTCCCGGCAGGATTTATGGTCATCTTCCACAGTCTCTCTCCCAGCTGAAGAATCTACGGTTTCTTGGCGTCAGCCGGAATTTCATCTCCGGTGAGATTCCGGCTGGGTTAGGCCAGCTCCGAAGCCTTAGAACAATCGATCTCAGCTACAACCAGCTCGCCGGAGCTATTCCTCGGTCGATCGGAGCCTTGTCGGAGCTGACCAACTTGGCACTCAGCCACAATCACCTCTCCGGTTCGGTTCCCTCATTCTGCTTGGCTCAGTCATTAACCCGGCTCGACCTCAAGCACAACATGTTGTCCGGTTCGCTTGCGCCCGATTCTCTTCCTCCTTCCCTCCAATACCTCTCACTTTCCTGGAACCGGTTCACTGGACCGGTGGACCGAGTGCTTACCCGACTCAATAACCTCAACTATTTGGACCTCAGCTTGAACTGGTTCACCGGCCCAATTCCTGCTCAGCTCTTCTCTTTCCCACTAACAAGCCTTCATTTAGAAAGGAATCAATTCACCGGTTCGGTCCAACCGTTGAACGAGGTAACGATCCAGACCGTTGATTTGAGCTATAACCAGTTCTCGGGTGAAATATCCCCCATGCTAGCTAGCGTGCAACACCTTTACCTAAACAACAACAAGTTCATTGGTCAAGTTCCGGGTAGCTTCGTAGAGCGGTTAATGACAGCAAGTATTCAAATATTATATCTGCAACACAATTACCTCACTGGAATTGCGATAAGCCCGACGGCAGAGATTCCAATGAGCAGCACCCTGTGTTTGCAGTATAATTGTATGGTGCCGCCGCCACAGATGACATGCCCCGTCAAAGCGGGTAACCAGAAAATCAGGCCGGCCCAGCAATGCCACAACCATTGA 1188 0.5101 MDIASSSCYSLLFLCFLHQSAQALLDPTDFLALQSIRKALHDVPGSSFFSSWDFTADPCNFPGVLCDSDKVIALSLGEPRAGSPGLTGKLDNAVGKLSSLAEFTVVPGRIYGHLPQSLSQLKNLRFLGVSRNFISGEIPAGLGQLRSLRTIDLSYNQLAGAIPRSIGALSELTNLALSHNHLSGSVPSFCLAQSLTRLDLKHNMLSGSLAPDSLPPSLQYLSLSWNRFTGPVDRVLTRLNNLNYLDLSLNWFTGPIPAQLFSFPLTSLHLERNQFTGSVQPLNEVTIQTVDLSYNQFSGEISPMLASVQHLYLNNNKFIGQVPGSFVERLMTASIQILYLQHNYLTGIAISPTAEIPMSSTLCLQYNCMVPPPQMTCPVKAGNQKIRPAQQCHNH* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1179 395 Gene3D Ribonuclease Inhibitor 28 191 IPR032675 -
Lja1g1179 395 Gene3D Ribonuclease Inhibitor 192 377 IPR032675 -
Lja1g1179 395 SUPERFAMILY L domain-like 27 369 - -
Lja1g1179 395 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 7 393 - -
Lja1g1179 395 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Lja1g1179 395 PANTHER LRR RECEPTOR-LIKE KINASE 7 393 - -
Lja1g1179 395 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1179 Lja-Chr1 12084575 12086497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1179 97 372 Receptor kinase-like Gene Family AT3G05370 26.667 3.28e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1179 - - gmx:100817314 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1179 1 12084575 12086497 Lja1g1179 1 12084575 12086497 ECH
Lja1g1179 1 12084575 12086497 Lja5g1105 5 11094276 11095846 PCT