Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1092 ATGGCGGCTGGTCCAGGATCACCCACCACAACCACCACCACCGATCAAGCTCCGGCGGCGCCACACCACCAACCGATGGTGGTCTCCGATTCCTTCGCTAAGGACGCAATCTTAGCCTGGTTTCGAGGAGAATTCGCCGCTGCTAACGCGATCATTGACGCCCTCTGTGCCCACCTGGCCTCCTCCTCCTCCGCTGCAGACTACAGCCCTGTGTTCGCCGCCATCCACCGCCGCAGGCTCAACTGGATCCCTGTCATCCAGATGCAGAAGTACCACTCCATTGCCGACGTCGCGCTCCAGCTCCGCAAGGTCGCTGATATGCAATCTTCCCCGCCGCCGGAGATTCCCCACGTAAACGACGTCGCCGCCGCCGAGGCCAAACAGAAAACCGATGAGAAAGTAATCGAAGCTGGCGTTGAAAATGGAGAACATGAAGAGGATGATTCTCCAGAAAGTGAGATTACTGATTCAGGATCTCAAGAAAATCAAGCTAACTCAATGAACATTAATATATGCTCCAATCATGAAGAGTGTGAAGGGCGTTCTTCACAGTTTAAGTTGACAAAAGGTTTCACAGCAAAGGAGTCAGTGAAGGGGCATATGGTGAATGTTGTGAAAGGGTTGAAGTTATATGAGGACATTTTCAATGATTCAGAAATGAGCAAGCTGTCAGATTTTGTGAGAGAGATCCATGCTGCTGGTCAGAATGGAGAACTCTCAGGTGAAACTTTTATCTTATTCAACAAACAGATCAAGGGGAACAAGAGAGAGCTGATTCAGCTGGGTGCTCCAATTTTTGGACAGATAAAGGAGGATGCAAAAAGCAATATAGAGCCAATTCCAGCACTTCTGCAACGTGTCATTGATCACCTTATTCAATGGCAATTAATTCCAGAGTACAAAAGGCCAAATGGTTGTATAATTAACTTTTTTGAAGAGGGGGAGTTTTCTCAGCCATTCCTGAAACCACCGCACCTGGATCAACCTGTATCCACTCTTCTTCTCTCTGAATCAAATATGGCTTTCGGGCATATCCTTATAAGTGAAAATGATGGGAATTACAAGGGACCACTCATGCTCTCATTGAAGAAGGGGTCGCTCTTAATAATGAGAGGAAACAGTGCTGACATGGCTAGGCACGTAATGTGTCCATCCCCTAACAGAAGGATCAGCATCACCTTCTTCAGAGTGAGACCAGACTCCAATCAATGCCAATCAGCAACCCCTCCCATGACAAATGCTATGACTCTGTGGCAACCTGGCATGGCTGCTAGCCCCTATGCTCTGCATAATGGTGCTGCTCTAAATGGCTATGAGAGCATGGATATGATGATGATGCCCAAATGGGGAATGCTTCGAGCTCCAATGGTGATGCTAGCCGCCCCTATGCGTCCAATGCCATTAAATCCCCGCAAGCTTGCTGGTGGCGGCACTGGGGTCTTCCTGCCATGGAATGTGCCATCTAGAAAGCCTGCAAAGCATCTTCCACCGCGTGCACAAAAAGGAAGGCTTCTGGCATTGCCCTCCCCCGCTGAACCACACATGGGAGAGTCAAGCTCTGAACCCAGCATTTGTGTTGAGGGATGA 1587 0.4921 MAAGPGSPTTTTTTDQAPAAPHHQPMVVSDSFAKDAILAWFRGEFAAANAIIDALCAHLASSSSAADYSPVFAAIHRRRLNWIPVIQMQKYHSIADVALQLRKVADMQSSPPPEIPHVNDVAAAEAKQKTDEKVIEAGVENGEHEEDDSPESEITDSGSQENQANSMNINICSNHEECEGRSSQFKLTKGFTAKESVKGHMVNVVKGLKLYEDIFNDSEMSKLSDFVREIHAAGQNGELSGETFILFNKQIKGNKRELIQLGAPIFGQIKEDAKSNIEPIPALLQRVIDHLIQWQLIPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPVSTLLLSESNMAFGHILISENDGNYKGPLMLSLKKGSLLIMRGNSADMARHVMCPSPNRRISITFFRVRPDSNQCQSATPPMTNAMTLWQPGMAASPYALHNGAALNGYESMDMMMMPKWGMLRAPMVMLAAPMRPMPLNPRKLAGGGTGVFLPWNVPSRKPAKHLPPRAQKGRLLALPSPAEPHMGESSSEPSICVEG* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1092 528 MobiDBLite consensus disorder prediction 490 528 - -
Lja5g1092 528 MobiDBLite consensus disorder prediction 1 19 - -
Lja5g1092 528 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 17 526 IPR044842 GO:0003729|GO:0006402|GO:0032451
Lja5g1092 528 Gene3D - 191 406 IPR037151 -
Lja5g1092 528 MobiDBLite consensus disorder prediction 139 162 - -
Lja5g1092 528 SUPERFAMILY Clavaminate synthase-like 198 398 - -
Lja5g1092 528 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 302 399 IPR005123 -
Lja5g1092 528 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 17 526 - -
Lja5g1092 528 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1092 Lja-Chr5 10929712 10935143 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1092 K10767 - gmx:100791586 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1092 5 10929712 10935143 Lja5g1092 5 10929712 10935143 ECH
Lja1g1168 1 11968162 11973851 Lja5g1092 5 10929712 10935143 PCT