Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1168 ATGGCGGCTGTTCCAGCAGCAACGCGGAGTGATCATCCACCGAAGACGCCGCCGCCGCAACCGGCACCGCCGGCGGTGCTGGTCTCCGACTCCTACGCTAAGGACGCCATCCTCGCTTGGTACCGCGGCGAGTTTGCTGCCGCCAACGCCATCATCGACGCCCTCTGCGGCCACCTCAAGGACCTCGCCGACCCCTCAGACTACGCTTCCACCTTCGCCGCCATCCACCGCCGCCGCTTCAACTGGATCCCCGTCATCCAGATGCAGACGTACCATTCCATCGCCGATGTCACACTCGAGCTTCAGAAGGTCGCCGAGAATATGAAGCAGCGCGAAGGAGGGCGGAGCACCGGCGGCGAGAGTGAGTTCCATCCGAAAGTAAAGATCGAAGAGAAGGAGAAGGAGGTGCTGGTGGAGAATGTCGGAAATGGAGACGCCGTCGCGGACGCCGAAGCTTCCGCGGAGGCGGAGGACTATGACTCACCGGAAAGTGAGATCACTGATTCAGGATCTCAAGAGATGCATCCACCCTGTTTGATGAACATTAGTATATGTTCCAATCATGAAGAATGTGAAGGACGCTATTCACAAATGAAGCTGCCAAAATTCTTCACAGCAAGGGATTCAGTGAAGGGGCACCCGGTGAATGTTGTGAAAGGATTGAAGTCGTATGAGGACATTTTTTCTGAATCAGAAATCTGCAAGCTATCTGATTTTGCGAATGAGATCCATGTTGCAGGACAGAACGGACAACTTTTAGGTGAAACTTTCACACTGTTCAACCAGCAGGTGAAGGGGAACAAGAGAGAGCTGATTCAGCTGGGTGTTCCAATATTTGGAAAGATACATGGTGATGCCAAACGTAATATAGAGCCAATTCCTCCATTTCTCCATAGTGTCATTGATCACCTTATTCAGTGGGACATAATTCAAGAGTACAAAAGGCCAAACGGTTGCATCATCAACTATTTTGAAGAGGGGGAATTTTCTCAGCCGTTCTTGAAACCACCACATTTGGATCAACCTCTATCCACTCTTCTTCTTTCTGAATCAACTATGGCATTTGGGCGTATCCTTGTGAGTGAAGATGAGGGGAACTACAAGGGTCCACTCATGCTCTCATTGAAGAAGGGGTCTCTTTTAGTAATGAGAGGACACAGTGTTGAAATGGCAAAGCACGTAATGTGTCCATCCCCTAACAGAAGGGTGAGCATCACCTTCTTCAGAGTGAAGCCAGACTCCAATCAATGCCAGTCACCAACTCCAACTATGACAACCGCGATGACTCTGTGGCAACCAGGCATTGCAAGCCCACTTGCATTGCCAAATGGAGCTCTAAGTGGCTATGAGGCTATGGATATGATGATGCACGAATGGGGAATGCTTGGTGCTCCAATGGTCATGCTAGCCCCTATGCTTCCAGGGGCGCTGAATGCAGACAAATTCCCTCTCGGTGGGACTGGGGTTTTCTTGCCTTGGACTGAGGCACCTAGAAAACAGCCAAGGCATCTTTCACCGCGTGCCCAGAGAGGAAGGGTTAGGGCATTGCCTCCCCCAGTTGAATCACACATGGGAGAGTCCAGTTCTGAACCCAGCATTACCCTTGAAGGATAG 1614 0.5124 MAAVPAATRSDHPPKTPPPQPAPPAVLVSDSYAKDAILAWYRGEFAAANAIIDALCGHLKDLADPSDYASTFAAIHRRRFNWIPVIQMQTYHSIADVTLELQKVAENMKQREGGRSTGGESEFHPKVKIEEKEKEVLVENVGNGDAVADAEASAEAEDYDSPESEITDSGSQEMHPPCLMNISICSNHEECEGRYSQMKLPKFFTARDSVKGHPVNVVKGLKSYEDIFSESEICKLSDFANEIHVAGQNGQLLGETFTLFNQQVKGNKRELIQLGVPIFGKIHGDAKRNIEPIPPFLHSVIDHLIQWDIIQEYKRPNGCIINYFEEGEFSQPFLKPPHLDQPLSTLLLSESTMAFGRILVSEDEGNYKGPLMLSLKKGSLLVMRGHSVEMAKHVMCPSPNRRVSITFFRVKPDSNQCQSPTPTMTTAMTLWQPGIASPLALPNGALSGYEAMDMMMHEWGMLGAPMVMLAPMLPGALNADKFPLGGTGVFLPWTEAPRKQPRHLSPRAQRGRVRALPPPVESHMGESSSEPSITLEG* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1168 537 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 18 535 IPR044842 GO:0003729|GO:0006402|GO:0032451
Lja1g1168 537 MobiDBLite consensus disorder prediction 149 173 - -
Lja1g1168 537 MobiDBLite consensus disorder prediction 11 25 - -
Lja1g1168 537 MobiDBLite consensus disorder prediction 1 26 - -
Lja1g1168 537 MobiDBLite consensus disorder prediction 497 537 - -
Lja1g1168 537 SUPERFAMILY Clavaminate synthase-like 212 410 - -
Lja1g1168 537 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 315 411 IPR005123 -
Lja1g1168 537 Pfam 2OG-Fe(II) oxygenase superfamily 319 409 IPR044861 -
Lja1g1168 537 Gene3D - 204 419 IPR037151 -
Lja1g1168 537 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 18 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1168 Lja-Chr1 11968162 11973851 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1168 K10767 - gmx:100796344 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1168 1 11968162 11973851 Lja1g1168 1 11968162 11973851 ECH
Lja1g1168 1 11968162 11973851 Lja5g1092 5 10929712 10935143 PCT