Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1036 ATGGGTTCTGGTTCAAAAGTTGGGAATAGCAACTATGATTACTCCTTTAAGATTTTGCTGACTGGTGATTCTGGTGTTGGAAAGAGTAGTCTTCTCCTCAGCTTCATATCCAACTCTAACTCTCTTTATGATCTTTCCCCCACAATTGGAGTTGATTTCAAGATGAAACTTATTACAATTAGTGGTAAAAGATTGAAGCTTACAATTTGGGACACAGCTGGACAAGAGAGGTTTGGAACAGTAATAAGCTCTTATTACAGAGGTGCACATGGGATCATTCTCGTCTATGATGTGACACGACGCGAGACATTTACAAACGTTGTGGAAATATGGGCAAAAGAGGTTGATCTGTACTCCACTAATCATGATTGCATCAAAATTCTTGTTGGCAATAAGGTGGATAAGGAAAGTGAAAGAGCTGTAACCAAAGAAGAGGGTATGGCTCTTGCAAAAGAGCATAGATGCTTATTCCTAGAGTGTAGTGCCAAAACTAGAGAAAATGTTCAACAATGCTTTAATGATCTCACATTAAAGATACTAGAGGTGCCGAGTTTGCGGGAAAAGGGTTCTGTTGTAGTAAAGAGACAAAAGCAAAAGCACTTGTATGAGACACCTCAAAGCGGAGGTTGCTGTTCTTAG 639 0.3959 MGSGSKVGNSNYDYSFKILLTGDSGVGKSSLLLSFISNSNSLYDLSPTIGVDFKMKLITISGKRLKLTIWDTAGQERFGTVISSYYRGAHGIILVYDVTRRETFTNVVEIWAKEVDLYSTNHDCIKILVGNKVDKESERAVTKEEGMALAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQKQKHLYETPQSGGCCS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1036 212 TIGRFAM small_GTP: small GTP-binding protein domain 14 173 IPR005225 GO:0005525
Lja5g1036 212 Gene3D - 9 211 IPR027417 -
Lja5g1036 212 ProSiteProfiles small GTPase Rab1 family profile. 11 212 - -
Lja5g1036 212 CDD Rab18 16 179 - -
Lja5g1036 212 SMART rho_sub_3 18 182 IPR001806 GO:0003924|GO:0005525
Lja5g1036 212 SMART ran_sub_2 21 212 - -
Lja5g1036 212 ProSiteProfiles small GTPase Rho family profile. 9 180 - -
Lja5g1036 212 Pfam Ras family 17 180 IPR001806 GO:0003924|GO:0005525
Lja5g1036 212 PANTHER DRAB5-RELATED 4 212 - -
Lja5g1036 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 200 IPR027417 -
Lja5g1036 212 PRINTS Transforming protein P21 ras signature 58 80 - -
Lja5g1036 212 PRINTS Transforming protein P21 ras signature 157 179 - -
Lja5g1036 212 PRINTS Transforming protein P21 ras signature 16 37 - -
Lja5g1036 212 PRINTS Transforming protein P21 ras signature 40 56 - -
Lja5g1036 212 PRINTS Transforming protein P21 ras signature 122 135 - -
Lja5g1036 212 SMART rab_sub_5 16 182 - -
Lja5g1036 212 SMART ras_sub_4 13 182 - -
Lja5g1036 212 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 4 212 - -
Lja5g1036 212 ProSiteProfiles small GTPase Ras family profile. 8 212 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1036 Lja-Chr5 10513295 10519256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1036 15 172 EF-hand Containing Proteins AT5G27540 26.994 3.68e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1036 K07910 - gmx:100809867 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1036 5 10513295 10519256 Lja1g0800 1 7748447 7752402 ECH
Lja5g1036 5 10513295 10519256 Lja5g1036 5 10513295 10519256 ECH