Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0800 ATGAGTTCATCCTCAGGTGGCTATGATCTCTCTTTCAAGATCTTGTTGATTGGAGATTCTGGTGTGGGAAAAAGCAGCCTACTTGTCAGCTTCATTTCCAGTTCTGTAGAGGATCAATCACCCACCATTGGTGTTGATTTTAAGATCAAAATGCTCACAGTAGGTGGGAAGAGATTAAAACTAACAATTTGGGACACAGCGGGACAGGAAAGGTTCAGGACTCTAACCAGTTCTTACTATAGAGGAGCGCAAGGAATCATTCTTGTTTATGATGTCACAAAAAGAGAAACCTTTACAAACTTATCCGAAGTGTGGTCTAAGGAACTGGAACTCTATTCAAGTAATCAAGATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGATGCTGCTAGGGCTGTGAGCAGAGAAGAGGGTTTAGCCCTTGCCAAAGAACTGGGGTGTTTGCTTATTGAATGCAGTGCTAAAACTCGAGAAAATGTGGAACAATGCTTTGAAGAACTGGCTCTAAAGATAATGGAAGCTCCTAGTCTTCTGGAAGAAGGATCAACAGCAGTAAAAAGGAATATTTTGAAGCAGAAACAAGAACCTCAAGCATCCCAACATGGTGGTTGTTGCTCCTAA 627 0.4131 MSSSSGGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDQSPTIGVDFKIKMLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTKRETFTNLSEVWSKELELYSSNQDCVKMLVGNKVDRDAARAVSREEGLALAKELGCLLIECSAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRNILKQKQEPQASQHGGCCS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0800 208 SMART rho_sub_3 14 177 IPR001806 GO:0003924|GO:0005525
Lja1g0800 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 196 IPR027417 -
Lja1g0800 208 ProSiteProfiles small GTPase Arf family profile. 5 174 - -
Lja1g0800 208 SMART ras_sub_4 9 176 - -
Lja1g0800 208 ProSiteProfiles small GTPase Rho family profile. 5 176 - -
Lja1g0800 208 PANTHER SMALL MONOMERIC GTPASE-RELATED 4 208 - -
Lja1g0800 208 PRINTS Transforming protein P21 ras signature 34 50 - -
Lja1g0800 208 PRINTS Transforming protein P21 ras signature 116 129 - -
Lja1g0800 208 PRINTS Transforming protein P21 ras signature 12 33 - -
Lja1g0800 208 PRINTS Transforming protein P21 ras signature 151 173 - -
Lja1g0800 208 PRINTS Transforming protein P21 ras signature 52 74 - -
Lja1g0800 208 CDD Rab18 12 173 - -
Lja1g0800 208 Gene3D - 5 207 IPR027417 -
Lja1g0800 208 Pfam Ras family 13 174 IPR001806 GO:0003924|GO:0005525
Lja1g0800 208 SMART ran_sub_2 17 207 - -
Lja1g0800 208 ProSiteProfiles small GTPase Rab1 family profile. 7 208 - -
Lja1g0800 208 SMART rab_sub_5 12 176 - -
Lja1g0800 208 ProSiteProfiles small GTPase Ras family profile. 2 208 IPR001806 GO:0003924|GO:0005525
Lja1g0800 208 SMART arf_sub_2 1 177 - -
Lja1g0800 208 TIGRFAM small_GTP: small GTP-binding protein domain 12 168 IPR005225 GO:0005525
Lja1g0800 208 PANTHER DRAB5-RELATED 4 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0800 Lja-Chr1 7748447 7752402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0800 7 188 EF-hand Containing Proteins AT5G27540 28.571 4.86e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0800 K07910 - gmx:100799887 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0800 1 7748447 7752402 Lja1g0800 1 7748447 7752402 ECH
Lja5g1036 5 10513295 10519256 Lja1g0800 1 7748447 7752402 ECH