Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1028 ATGGCCAAGGGCGAGAAGAAGCCAGCGGAGAAGAAGCCCGCCGCCGAGAAGGCACCACCGGCGAAGGCGGAGAAGAAGGTCCCGACGAAGGACGCGGCCTCCGTTGACAAGAAGAAGAAGAAGAAGTCGAAGAGCGTCGAGACCTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCACCCTGACATTGGAATCTCCAGCAAGGCTATGGGGATCATGAATAGCTTCATCAATGATATCTTTGAGAAGCTTGCTCAGGAGTCTTCGAGACTTGCGAGGTACAACAAGAAGCCTACCATCACCTCGAGGGAGATTCAGACTGCTGTTCGCCTTGTGCTTCCCGGTGAGCTTGCTAAGCATGCTGTCTCTGAGGGTACCAAGGCTGTTACGAAGTTTACCAGCTCTTGA 411 0.5304 MAKGEKKPAEKKPAAEKAPPAKAEKKVPTKDAASVDKKKKKKSKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1028 136 SMART h2b3 39 135 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja5g1028 136 Pfam Core histone H2A/H2B/H3/H4 6 112 IPR007125 GO:0003677
Lja5g1028 136 ProSitePatterns Histone H2B signature. 104 126 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja5g1028 136 PANTHER HISTONE H2B 5 136 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja5g1028 136 SUPERFAMILY Histone-fold 22 136 IPR009072 GO:0046982
Lja5g1028 136 Gene3D Histone, subunit A 4 136 IPR009072 GO:0046982
Lja5g1028 136 PANTHER HISTONE H2B 5 136 - -
Lja5g1028 136 PRINTS Histone H2B signature 49 67 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja5g1028 136 PRINTS Histone H2B signature 68 88 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja5g1028 136 PRINTS Histone H2B signature 90 107 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja5g1028 136 PRINTS Histone H2B signature 107 120 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja5g1028 136 PRINTS Histone H2B signature 120 133 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lja5g1028 136 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1028 Lja-Chr5 10431501 10432098 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1028 K11252 - psom:113299834 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1389 1 14801035 14804431 Lja5g1028 5 10431501 10432098 ECH
Lja5g1028 5 10431501 10432098 Lja5g1028 5 10431501 10432098 ECH