Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1389 ATGTTGGCTCTTCGTCGAGCTTCTCTCCCTCTCAGGAAAAGAGGGTTTAATGTTAGGGTTTCATGTGCCAAATTAACATCAACCACTGTAGAAGACAAAGCTGAGTCCTATCCAACGATTCATGCTAGTGTTGGTGTGTTTCATCCTTCACTGAATGCTAGTTTCCATTCTTTGAAATTCAATGTGTGTGGTTCACGTCACCTTTCGTCGAATGCCGGTGCGAGTAGCACCAAAGGCGACGAGGATGATGATGAGTTTTCTGAACTGGAGAGTCCGGTTGCTGCTGGTGGGGATGAGGATGATCTGTTGAGTTCTGATAATGAATCGGAGGGTGGTGAGGAACCGCACGATGAGCTGGAGTTGTCTGATGGCGAGACTGGTGAACCGGCTGAGAAGAAGAAAGCGTACCGGAAAAGGATTGAGTCGGAACTGTGTAATAAGATTATGGATGCTCCGGGGATGGCCATTCATACGGCTCTGGATAAGTGGGTTGAAGAAGGGAAAGAAATGAGCAGACAAGAGATCTCTCAGGCCATATTTCTTCTTCGCAAGCGTAATATGTACGGGAGAGCTTTGCAGCTCTCAGAGTGGCTCGAGTCAAAAAAGCAGATTGAATTTATTGAAAGGGATTATGCTTCTCGAGTTGATTTAATTGCCAAAATTCATGGCCTACAGAAGGCAGAGGCTTACGTTGAGACTATTCCAGAGTCTCTTAGAGGGGAGGTAATATACCGAACTTTATTGGCTAACTGTGTCCAAAAGAACAATGTGAAGAAAGCAGAGGAAATTTTTAATAAAATGAAGGATTTGGATTTTCCTCTTACGGCATTTGCGTGCAATCAGTTGCTTCTTCTATATAAGAAGAATGACAAGAGGAAAATAGCTGATGTGTTATTGTTGATGGAAAATGAGAATGTCAAACCTTCTCCACTTACTTATAACATCTTAATAGATGTAAAAGGCCTGTCCAAAGATATTGCTGGAATGGATCAAATTGTTGACAAAATGAAGGAGGAAGGCCTTGAACTAGACGTAAAAACAAAGGCTGTTTTGGTTGGGCATTACATCTCATTTGGGCTTGAAGATAAAGCTGAAGCTTTATTGAAGGAGATGGAAGGTGAGAACTTGAAACAAAATCGGTGGGTATGCCGAACTTTGCTTCCCCTCTATGCAAACCTGGGGAAGGCGGATGATGTGGGAAGGATTTGGAAGGTCTGTGTGACAAACCCTTACGTTGAGGAGTGCTTGGCTGCAATTGAAGCTTGGGGGAAGTTGAATAAAATCGACGAGGCAGAGGCAGCTTTTGAGATGTTGTCAGGAAAGACGGAGCTTTCTTCCAAGAACTGCTCAGCAATGCTGAGGGTTTATGCAAATCATAAGATGCTAATGAAGGGTAAGGATCTTGTTAAGCGAATGGCGGATAGTGGGTGCCGAATAGGTCCATTGACATGGGATGCAATTGTGAAACTTTATGTCGAGGCTGGGGAAGTGGAGAAGGCAGACTCTATTCTTCAGAAGGCAACTCAGCAGAGCCATGCCAACCAGGTGAAGCCACTATTTTCTTCCTATATTGCTATCTTGGAGCAGTATTCTAAGAGGGGCGACATCCATAATTCAGAAAAGATTTTCTACAGAATGAAACAAGCTGGTTATACATCGCGAATAAGGCAGTACCAGGTTCTACTACAGGCCTATATAAAGGCCAAGCTTCCAGCCTATGGAATTAGAGACAGATTGAAAGGTGATAATATATATCCAAACAGAAATTTGGCCACCTTGTTGGCTCAAGTTGATGGATTCAGGAAGACTCCTGTTTCTGATTTGCTTGATTGA 1833 0.4337 MLALRRASLPLRKRGFNVRVSCAKLTSTTVEDKAESYPTIHASVGVFHPSLNASFHSLKFNVCGSRHLSSNAGASSTKGDEDDDEFSELESPVAAGGDEDDLLSSDNESEGGEEPHDELELSDGETGEPAEKKKAYRKRIESELCNKIMDAPGMAIHTALDKWVEEGKEMSRQEISQAIFLLRKRNMYGRALQLSEWLESKKQIEFIERDYASRVDLIAKIHGLQKAEAYVETIPESLRGEVIYRTLLANCVQKNNVKKAEEIFNKMKDLDFPLTAFACNQLLLLYKKNDKRKIADVLLLMENENVKPSPLTYNILIDVKGLSKDIAGMDQIVDKMKEEGLELDVKTKAVLVGHYISFGLEDKAEALLKEMEGENLKQNRWVCRTLLPLYANLGKADDVGRIWKVCVTNPYVEECLAAIEAWGKLNKIDEAEAAFEMLSGKTELSSKNCSAMLRVYANHKMLMKGKDLVKRMADSGCRIGPLTWDAIVKLYVEAGEVEKADSILQKATQQSHANQVKPLFSSYIAILEQYSKRGDIHNSEKIFYRMKQAGYTSRIRQYQVLLQAYIKAKLPAYGIRDRLKGDNIYPNRNLATLLAQVDGFRKTPVSDLLD* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1389 610 Pfam Pentatricopeptide repeat domain 515 565 IPR002885 -
Lja1g1389 610 MobiDBLite consensus disorder prediction 101 121 - -
Lja1g1389 610 MobiDBLite consensus disorder prediction 70 135 - -
Lja1g1389 610 Gene3D Tetratricopeptide repeat domain 412 607 IPR011990 GO:0005515
Lja1g1389 610 PANTHER OS12G0527900 PROTEIN 36 610 - -
Lja1g1389 610 Pfam PPR repeat 450 477 IPR002885 -
Lja1g1389 610 Pfam Pentacotripeptide-repeat region of PRORP 244 402 IPR033443 -
Lja1g1389 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Lja1g1389 610 Gene3D Tetratricopeptide repeat domain 240 411 IPR011990 GO:0005515
Lja1g1389 610 TIGRFAM PPR: pentatricopeptide repeat domain 242 274 IPR002885 -
Lja1g1389 610 PANTHER OS01G0280400 PROTEIN 36 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1389 Lja-Chr1 14801035 14804431 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1389 148 550 EF-hand Containing Proteins AT1G02150 22.276 1.62e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1389 - - gmx:100500196 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1389 1 14801035 14804431 Lja5g1028 5 10431501 10432098 ECH
Lja1g1389 1 14801035 14804431 Lja1g1389 1 14801035 14804431 ECH