Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0735 ATGACTGAACCCTCCAAGGTCATTCACGTTCGAAACGTGGGGCACGAAATATCTGAAAATGATTTACTTCAGCTATTTCAACCTTTTGGAGTAATAACAAAGCTTGTGATGCTGCGTGCTAAAAATCAGGCTCTTCTACAAATGGACGATGTATCTTCTGCAGTTACTGCTATACAGTTTTATGCAAATATGCAGCCAAGCATAAGGGGGAGGAATGTTTATGTTCAGTTCTCCTCACATCAAGAACTAACAACAGTAGATCAAAGTCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACAATTCATCACATGCTCTATCCTATGACTGTGGATGTGCTCTATCAAGTATTTTCTCCCCATGGATCTGTGGAGAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTGATCCAGTATCAATCACGTCAGAGTGCTGTTACTGCTAGAAGTGCACTTCAGGGTCGCAATATTTATGACGGTTGCTGTCAGCTGGACATTCAATTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGGGACTTCACTAACCCAAATCTCCCTACAGAGCAGAAAGGCAGGCCTTCCCAACCTGGATATGGTGATGGAGGAAACATGTATCCTGCTCAAGGTTCAGGAGCTAGGGGAGGAGGTGGATTTCCACAGATGGGCAATGCTTCAGCCATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGGATAACTGGGACAAATGACAGGTGTACAATTCTCGTATCAAATCTTAATCCTGATAGAGTAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTACGGGAACATTGTGAGAATTAAACTTCTCCGAAACAAACCAGATCATGCACTTATCCAGATGGGAGATGGTTTCCAAGCTGAACTTGCAGTGCACTTTCTGAAGGGGGCCATATTGTTTGGGAAGCCACTAGAGGTAAACTTCTCCAAGCATGCTACCATAACCCAAGGTGCTGATACGCACGAGTACTCAAATTCAAATCTCAATCGTTTCAATCGCAATGCTGCTAAAAACTACCGCTACTGTTGCTCCCCAACGAGAATGATCCATTTATCCACACTCCCTCAAGACGTCACTGAGGAGGAGATTGCGAGCCTTGTTGAGGAGCACGGAACCATTGTCAACTGCAAAGTGTTTGAGATGAATCAGAAGAAACAGGCTCTGGTTCAGTTTGAGACTGAGGAGCAGGCTACTGAAGCCCTCGTGTGCAAGCATGCCACCTCGCTTTCTGGCTCAGTGATCCGGATCTCCTTTTCCCAGTTACAGAACATTTGA 1335 0.4464 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMDDVSSAVTAIQFYANMQPSIRGRNVYVQFSSHQELTTVDQSQGRGDEPNRILLVTIHHMLYPMTVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDGGNMYPAQGSGARGGGGFPQMGNASAIAAAFGGGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAILFGKPLEVNFSKHATITQGADTHEYSNSNLNRFNRNAAKNYRYCCSPTRMIHLSTLPQDVTEEEIASLVEEHGTIVNCKVFEMNQKKQALVQFETEEQATEALVCKHATSLSGSVIRISFSQLQNI* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0735 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Lja5g0735 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 435 IPR000504 GO:0003723
Lja5g0735 444 SUPERFAMILY RNA-binding domain, RBD 364 442 IPR035979 GO:0003676
Lja5g0735 444 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 443 - -
Lja5g0735 444 SUPERFAMILY RNA-binding domain, RBD 96 197 IPR035979 GO:0003676
Lja5g0735 444 Gene3D - 1 97 IPR012677 -
Lja5g0735 444 Gene3D - 348 443 IPR012677 -
Lja5g0735 444 SMART rrm1_1 101 170 IPR000504 GO:0003723
Lja5g0735 444 SMART rrm1_1 258 327 IPR000504 GO:0003723
Lja5g0735 444 SMART rrm1_1 7 76 IPR000504 GO:0003723
Lja5g0735 444 SMART rrm1_1 368 437 IPR000504 GO:0003723
Lja5g0735 444 Gene3D - 251 347 IPR012677 -
Lja5g0735 444 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Lja5g0735 444 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 440 IPR006536 GO:0003723|GO:0005634|GO:0006397
Lja5g0735 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 367 441 IPR000504 GO:0003723
Lja5g0735 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Lja5g0735 444 MobiDBLite consensus disorder prediction 185 227 - -
Lja5g0735 444 CDD RRM4_PTBPH3 360 438 - -
Lja5g0735 444 Pfam RRM-like domain 95 174 IPR021790 -
Lja5g0735 444 Gene3D - 98 201 IPR012677 -
Lja5g0735 444 MobiDBLite consensus disorder prediction 185 202 - -
Lja5g0735 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 343 - -
Lja5g0735 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 331 IPR000504 GO:0003723
Lja5g0735 444 SUPERFAMILY RNA-binding domain, RBD 247 338 IPR035979 GO:0003676
Lja5g0735 444 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0735 Lja-Chr5 6755453 6762294 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0735 K14948 - gmx:100819672 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0735 5 6755453 6762294 Lja5g0735 5 6755453 6762294 ECH
Lja2g2781 2 42444102 42486057 Lja5g0735 5 6755453 6762294 PCT