Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2781 ATGGGGCATGAGATATCTGAAAATGATTTGCTTCAGCTATTTCAGCCTTTTGGAGTCATAACAAAGCTTGTAATGTTGCGTGCCAAAAATCAGGCACTTCTCCAAATGCAAGATGTTCCTTCCGCAGTTAGTGCTTTACAATTTTATGCAAATGTTCAGCCAAGCATAAGGGGGAGAAATGTTTATGTCCAGTTTTCCTCACATCAAGAACTAACTACAATGGATCAGACTCAAGCACGAGAAGATGAGCCAAATCGAATTCTCTTGGTTACAGTTCATCACATGCTGTATCCTATAACAGTGGATGTACTACATCAAGTGTTTTCTCCCAATGGATATGTGGAAAAGATTGTAACGTTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAATTTCAATCCTGTCAAAGTGCTATTACTGCCAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAATTCTCAAACCTTGATGAGTTACAAGTGAACTTCAATAATGATCGGCCAAGGGACTTCACAAACCCAAATCTGCCTACAGAGCAGAAAGGCCGATCTTCACAACCTGGATATGGTGATGCAGGAGGCATGTACGGGGCTGGACCCAGGGGAGCAAGTTATTATCAGATGGCAAATGCTGCTGCAATTGCAACTGCCTTTGGAGGAGGTTTGCCTCCTGGAATAACTGGAACAAATGACAGATGCAGAGTTCTTGTGGCAAATCTCAACCCTGATGGAGCCATGTTGTTTGGGAAGCGATTGGAAGTTAACTTCTCGAAGCATGCAAACATAAACCAAGGTGATGATACACATGAGTATGTGAATTCAAATCTCAACCGATTCAATCGCAATGCTGCTAAAAACTATCGGTACTGCTGCTCACCGACAAAGATGATCCACTTGTCCACCCTCCCGCAAGACATTGCCGAAGAAGAGATTGTTAGCCTTTTGGAGGAGCATGGAACCATTGTCAACAGCAAGTTATTTGAGATGAATGGTAAAAAGCAGGCTCTTGTTCAGTTTGAGACTGAGGAGCAAGCTACTGAGGCCCTTGTGTGCAAGCATGCAAGCCCCCTTTCTGGCTCGATAGTCCGCATCTCCTTTTCCCAGTTGCAGAATATATGA 1143 0.4374 MGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQFSSHQELTTMDQTQAREDEPNRILLVTVHHMLYPITVDVLHQVFSPNGYVEKIVTFQKSAGFQALIQFQSCQSAITARSTLQGRNIYDGCCQLDIQFSNLDELQVNFNNDRPRDFTNPNLPTEQKGRSSQPGYGDAGGMYGAGPRGASYYQMANAAAIATAFGGGLPPGITGTNDRCRVLVANLNPDGAMLFGKRLEVNFSKHANINQGDDTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDIAEEEIVSLLEEHGTIVNSKLFEMNGKKQALVQFETEEQATEALVCKHASPLSGSIVRISFSQLQNI* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2781 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 275 - -
Lja2g2781 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 84 - -
Lja2g2781 380 SUPERFAMILY RNA-binding domain, RBD 3 76 IPR035979 GO:0003676
Lja2g2781 380 SUPERFAMILY RNA-binding domain, RBD 83 185 IPR035979 GO:0003676
Lja2g2781 380 SMART rrm1_1 1 64 IPR000504 GO:0003723
Lja2g2781 380 SMART rrm1_1 89 158 IPR000504 GO:0003723
Lja2g2781 380 SMART rrm1_1 304 373 IPR000504 GO:0003723
Lja2g2781 380 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 2 251 - -
Lja2g2781 380 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 251 379 - -
Lja2g2781 380 MobiDBLite consensus disorder prediction 173 193 - -
Lja2g2781 380 CDD RRM4_PTBPH3 296 374 - -
Lja2g2781 380 Gene3D - 86 189 IPR012677 -
Lja2g2781 380 Gene3D - 1 85 IPR012677 -
Lja2g2781 380 Gene3D - 285 380 IPR012677 -
Lja2g2781 380 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 2 251 - -
Lja2g2781 380 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 251 379 - -
Lja2g2781 380 SUPERFAMILY RNA-binding domain, RBD 295 379 IPR035979 GO:0003676
Lja2g2781 380 MobiDBLite consensus disorder prediction 173 201 - -
Lja2g2781 380 Pfam RRM-like domain 85 162 IPR021790 -
Lja2g2781 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 362 IPR000504 GO:0003723
Lja2g2781 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 68 IPR000504 GO:0003723
Lja2g2781 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 377 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2781 Lja-Chr2 42444102 42486057 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2781 K14948 - gmx:100798234 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2781 2 42444102 42486057 Lja2g2781 2 42444102 42486057 ECH
Lja2g2781 2 42444102 42486057 Lja5g0735 5 6755453 6762294 PCT