Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0689 ATGGCTCAGGTGGTAGCCACTCGATCCATTCACACCTCTATCTCACACCCCACATCAGGATCTGCACACGACCGGGCTCAAACGTTGTTAAAGCCTCAAACCTTTGCTTCCAAACTGCTCTCGAACAATCCTGCCAAAGTTTGCTTCAGGAGCTGTAGCATTCATGCTAGCAAATCTGCACCCGCTGATGTTGTCCCCGTGTCACCCGATGATGATTCTAAGATAGCGGAGGAGTTGCTGCACATGCGTGGTATGCAGCAACTTAGTGACACTACTGTTGGAATGTGGTCCAAGCCAATGTTCAGGAGAAAGACAAAGATTGTTTGTACTATTGGTCCTTCTACTGACACCAAGGAAATGATTTGGAAGCTAGCTGAGGCTGGGATGAATGTTGCTCGTTTGAATATGTCTCATGGAGATCATGCTTCTCATCAGAAAGTTATTGATTTGGTTAAGGAATATAATGCGCAATCCAAGGACAATGTAATTGCAATTATGCTTGACACCAAGGGTCCTGAGGTTAGGAGTGGCGATTTGGCTCAACCAGTTGAGTTAACAACTGGGCAGGAATTCACTTTTACTATCCAGAGGGGCGTGGGAACTGCAGATTGTGTTAGCGTGAACTATGATGATTTCGTCAATGATGTGGAAGCAGGGGACATGCTACTTGTTGATGGTGGTATGATGTCTTTGGTGGTGAAGTCTAAGACAGAGGATTCTGTGAAATGTGAAGTTATTGATGGAGGAGAGCTTAAGTCAAGGAGACATTTGAACGTTAGGGGAAAGAGTGCCACACTGCCTTCGATCACTGAGAAGGATTGGGATGACATCAAATTTGGAGTCGATAATGAAGTTGACTTCTACGCTGTTTCCTTCGTCAAGGATGCACAAGTTGTTCATGAGCTGAAGAGTTATCTAAGAAGCCATGGTGCTGATATACACGTCATTGTAAAGATTGAAAGTGCAGACTCTATACCAAACTTGCACTCAATTATTACAGCGTCTGATGGGGCTATGGTTGCAAGAGGAGATCTTGGCGCAGAGCTTCCGATTGAGGAGGTTCCACTTTTGCAGGAAGAGATAATTAAGACATGCCGTAGCATGGGAAAGGCTGTTATTGTCGCGACAAATATGCTGGAAAGCATGATTGTTCACCCAACACCAACCAGAGCAGAGGTATCTGATATTGCAATTGCTGTTCGAGAAGGTTCTGATGGAATAATGCTATCTGGAGAAACTGCCCATGGAAAATTCCCACTAAAAGCTGTGAAAGTAATGCACACAGTAGCGTTACGAACAGAAGCCAGTATACCAGGTGGGCAAATGCCTCCTAATATTGGTCAAGTATTCAAGAATCACATGAGTGAGATGTTTGCATACCATGCAACCATAATGTCTAATACCCTTGGAACCTCAACTGTTGTCTTCACAAGATCCGGTTTCATGGGTATCCTTCTAAGCCATTATCGACCTTCCGGCACCGTATTTGCGTTTACAGATAAGAAGAGAGTACAACAGAGGTTGGCTTTGTATCAAGGAGTCTGTCCTATTTACATGGAATTCTCGGATGACGCCGAAGAGACTTTCTCAAGAGCCTTGGACTTGTTGCAGAAGCAAGGAATGGTTAAAGAAGGAGAAGAAGTAGCCATAGTACAGAGTGGGAGGCAACCCATATGGAGGATCCACTCAACTCACAATATCCAGGTCCGAACAGTGTGA 1719 0.4468 MAQVVATRSIHTSISHPTSGSAHDRAQTLLKPQTFASKLLSNNPAKVCFRSCSIHASKSAPADVVPVSPDDDSKIAEELLHMRGMQQLSDTTVGMWSKPMFRRKTKIVCTIGPSTDTKEMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLAQPVELTTGQEFTFTIQRGVGTADCVSVNYDDFVNDVEAGDMLLVDGGMMSLVVKSKTEDSVKCEVIDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNEVDFYAVSFVKDAQVVHELKSYLRSHGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIKTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPLKAVKVMHTVALRTEASIPGGQMPPNIGQVFKNHMSEMFAYHATIMSNTLGTSTVVFTRSGFMGILLSHYRPSGTVFAFTDKKRVQQRLALYQGVCPIYMEFSDDAEETFSRALDLLQKQGMVKEGEEVAIVQSGRQPIWRIHSTHNIQVRTV* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0689 572 Gene3D - 173 266 IPR015806 GO:0004743|GO:0006096
Lja5g0689 572 PRINTS Pyruvate kinase family signature 411 427 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lja5g0689 572 PRINTS Pyruvate kinase family signature 315 341 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lja5g0689 572 PRINTS Pyruvate kinase family signature 285 299 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lja5g0689 572 PRINTS Pyruvate kinase family signature 342 366 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lja5g0689 572 PRINTS Pyruvate kinase family signature 367 391 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lja5g0689 572 PRINTS Pyruvate kinase family signature 161 177 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lja5g0689 572 PRINTS Pyruvate kinase family signature 392 410 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lja5g0689 572 Gene3D - 445 572 IPR036918 -
Lja5g0689 572 PANTHER PYRUVATE KINASE 43 572 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lja5g0689 572 Pfam Pyruvate kinase, barrel domain 103 438 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lja5g0689 572 PANTHER PLASTIDIAL PYRUVATE KINASE 2 43 572 - -
Lja5g0689 572 MobiDBLite consensus disorder prediction 1 24 - -
Lja5g0689 572 SUPERFAMILY PK beta-barrel domain-like 172 263 IPR011037 -
Lja5g0689 572 Pfam Pyruvate kinase, alpha/beta domain 465 552 IPR015795 -
Lja5g0689 572 ProSitePatterns Pyruvate kinase active site signature. 313 325 IPR018209 GO:0004743|GO:0006096
Lja5g0689 572 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 88 437 IPR015813 GO:0003824
Lja5g0689 572 SUPERFAMILY PK C-terminal domain-like 421 572 IPR036918 -
Lja5g0689 572 Gene3D - 105 430 IPR040442 -
Lja5g0689 572 TIGRFAM pyruv_kin: pyruvate kinase 103 572 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0689 Lja-Chr5 6191333 6196325 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0689 K00873 - gmx:100809327 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0689 5 6191333 6196325 Lja5g0689 5 6191333 6196325 ECH
Lja2g2707 2 39304221 39311260 Lja5g0689 5 6191333 6196325 PCT