LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g2707	ATGGCTCAGGTTGTTGCCACTCGATCCATTCAGAGCACCACTCTCTTGAACCCCGCTTCTGGATCTGCACATGACAGGGCTCAGAAGCTCTTAAAACCTGCAACTTTTTCTTCCAAGGTGTTCTCCTCAGAAGGGAACAAGGGATATCGAGTTGGCTTCAGAAGCTCTCAGATCAGTGCCAGGAAATCGGCACCTGTTGAGGTTGTCCCTGTTTCACCTGAAGATGATCCAAAGATTGAGCAGCATTTGCAGCATTTGCGTGGGGTGGAGCCACTTGGTGACAGTTCGGTTGGAATGTGGTCGAAACCGGCGTTTAGGCGCAAGACAAAGATAGTGTGCACTATTGGACCTTCTACTGATACCAAGGAAATGATTTGGAAGCTAGCTGAAGCTGGGATGAATGTTGCTCGTCTCAATATGTCTCATGGTGACCATGCTTCTCATCAGAAAGTTATTGACTTGGTTAAAGAGTATAATGCACAACACAAGGACAATGTCATTGCAATTATGCTTGATACTAAGGGTCCTGAGGTTAGGAGTGGGGATTTGCCACAACCAATCGCATTATCAACTGGGCAAGAATTCACTTTTACTATTAAGAGAGGTGTTGGAACTGCAGATTGTGTTAGTGTGAACTATGATGATTTTGTCAATGACGTGGAAGAGGGGGACATGATTCTTGTTGATGGTGGCATGATGTCTCTGCTGGTTAAGTCTAAGACAGATGATTCGGTGAAATGTGAAGTTGTTGATGGAGGGGACCTCAAGTCAAGACGACATTTGAATGTTAGAGGAAAAAGTGCAACACTGCCTTCAATCACTGAGAAGGATTGGGATGATATCAAATTCGGTGTGGATAACAAAGTCGATTTCTATGCTGTTTCTTTTGTTAAGGATGCTGAAGTTGTTCATGAACTGAAGAACTATTTGAAAAGCTGTGACGCTGATATACACGTCATTGTTAAAATTGAAAGTGCAGACTCAATACCAAACTTGCATTCAATTATCACCGCATCTGATGGGGCTATGGTTGCCAGAGGTGATCTTGGTGCAGAGCTCCCTATTGAAGAGGTTCCGCTTTTGCAGGAAGAGATAATAAGGTTGTGCCGTAGCATGGGAAAGGCTGTCATTGTGGCAACAAATATGCTGGAAAGCATGATTGTTCACCCTACTCCAACCAGAGCAGAAGTATCAGATATAGCAATTGCTGTTCGAGAAGGTTCTGATGGAATAATGTTGTCTGGGGAAACTGCTCATGGAAAGTTCCCGCTAAAAGCTGTGAAAGTAATGCATACAGTAGCATTACGGACCGAAGCCACTATATCAGGTGGTCAAATGCCACCTAATATCGGTCAAGTGTTCAAGAACCACATGAGCGAGATGTTTGCATACCATGCAACCATGATGTCTAACACTCTTGGAACCTCGACTGTTGTCTTCACTAGAACGGGTTTCATGGCTATCCTTCTTAGTCACTATCGTCCTTCTGGCACCATATTTGCATTTACAGATGAGAAGAGGGTACAGCAGAGGTTGGCTTTGTACCAAGGAGTCTGTCCTGTATACATGGAATTCTGTGATGATTCTGAAGCGACTTTCAGAAGAGCCTTGGATTTGCTGAAGGGGCAAGGAATGGTGAAGGAAGGTGAAGAAGTGGCACTTGTACAAAGTGGTAGGCAACCCATATGGAGGTTCCAATCCACTCATAATATCCAGGTCAGGAAAGTGTGA	1731	0.4431	MAQVVATRSIQSTTLLNPASGSAHDRAQKLLKPATFSSKVFSSEGNKGYRVGFRSSQISARKSAPVEVVPVSPEDDPKIEQHLQHLRGVEPLGDSSVGMWSKPAFRRKTKIVCTIGPSTDTKEMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQHKDNVIAIMLDTKGPEVRSGDLPQPIALSTGQEFTFTIKRGVGTADCVSVNYDDFVNDVEEGDMILVDGGMMSLLVKSKTDDSVKCEVVDGGDLKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAEVVHELKNYLKSCDADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRLCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPLKAVKVMHTVALRTEATISGGQMPPNIGQVFKNHMSEMFAYHATMMSNTLGTSTVVFTRTGFMAILLSHYRPSGTIFAFTDEKRVQQRLALYQGVCPVYMEFCDDSEATFRRALDLLKGQGMVKEGEEVALVQSGRQPIWRFQSTHNIQVRKV*	577

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g2707	576	Gene3D	-	177	270	IPR015806	GO:0004743\|GO:0006096
	Lja2g2707	576	Gene3D	-	449	576	IPR036918	-
	Lja2g2707	576	SUPERFAMILY	PK C-terminal domain-like	425	576	IPR036918	-
	Lja2g2707	576	ProSitePatterns	Pyruvate kinase active site signature.	317	329	IPR018209	GO:0004743\|GO:0006096
	Lja2g2707	576	Gene3D	-	109	434	IPR040442	-
	Lja2g2707	576	SUPERFAMILY	PK beta-barrel domain-like	176	267	IPR011037	-
	Lja2g2707	576	Pfam	Pyruvate kinase, barrel domain	107	442	IPR015793	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja2g2707	576	Pfam	Pyruvate kinase, alpha/beta domain	464	556	IPR015795	-
	Lja2g2707	576	PRINTS	Pyruvate kinase family signature	396	414	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja2g2707	576	PRINTS	Pyruvate kinase family signature	371	395	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja2g2707	576	PRINTS	Pyruvate kinase family signature	415	431	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja2g2707	576	PRINTS	Pyruvate kinase family signature	319	345	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja2g2707	576	PRINTS	Pyruvate kinase family signature	346	370	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja2g2707	576	PRINTS	Pyruvate kinase family signature	289	303	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja2g2707	576	PRINTS	Pyruvate kinase family signature	165	181	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja2g2707	576	PANTHER	PYRUVATE KINASE	50	576	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja2g2707	576	PANTHER	PLASTIDIAL PYRUVATE KINASE 2	50	576	-	-
	Lja2g2707	576	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	99	441	IPR015813	GO:0003824
	Lja2g2707	576	TIGRFAM	pyruv_kin: pyruvate kinase	107	575	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g2707	Lja-Chr2	39304221	39311260	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g2707	K00873		-	gmx:100815822	1020.76

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja2g2707	2	39304221	39311260	Lja2g2707	2	39304221	39311260	ECH
	Lja2g2707	2	39304221	39311260	Lja5g0689	5	6191333	6196325	PCT