Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0658 ATGGACGCTCCCCTGCTCCACGGCGTTGGACAAGAGGCGGCGGCGGAGGAGGGTGACTATGCGGCGGTGAAGAATTTCCAGGACGCCAGGAAGGTTTTCTGGACTGAAAGTGTCAGAATATGGCGAATTGCGGTGCCTATCATTTTCAACATATGGTGCCAATATGGTGTTAACTCCATTACCAGCATCTTCGTTGGCCATCTCGGTGACCTTGAACTCTCTGCTGTTTCTCTCATTAACTCTGTCATTGGTACTTTCTCTTTTGGCTTCATGCTTGGCATGGGGAGCGCAACTGAGACTCTTTGCGGTCAAGCTTTTGGAGCTGGGCAGGTTGGCATGCTTGGTGTTTATATGCAGCGCTCGTGGGTAATCTTATTTGTGACTAGTATTTGCCTCTTGCCAATATACATTTTTGCTGGTCCAATTTTAACGCTTCTTGGCCAACAGAAAGACATAGTTGATCTTGCTGGACATTTCTCTCTTTTAGTAATTCCTCAATTTCTCTCACTTTCCCTCAATTTTCCAACCCAAAAGTTCCTTCAAGCTCAGAGTAAGGTGAATGTAATTGCATGGATTGGGTTTGTGGCTCTAATTGTGCATGTTGGGATGCTCTGGCTCTTAATTTATGTATTAGATTTAGGCTTAACTGGTGCAGCGTTGGCGTTTGATATCACAAGTTGGGGAATCTCAGTGGCTCAGCTTGTTTATGTGGTGGTTTGGTGTAAGGATGTATGGACTGGATTGACATGGTTGGCTTTTAAGGATATATGGGCCTTTGTTAAGCTGTCCCTTGCATCAGCTGTTATGCTTTGCCTTGAAGTTTGGTATATGATGAGCCTCATAGTTCTTGCTGGACACCTTGGTAATGCAGTGATTGCTGTTGATTCCATCTCTATATGCATGAATTTCAATGGGTGGGAAAACATGATCTTCATTGGAGTAAATGCAGCTATCAGTGTCAGAGTTTCCAACGAACTTGGACTTCGACGTCCAAGAACAGCTAAATTCTGTGTCTATGTGACAATAATTCAGTCTCTTTTAATTGGAATCTTCTTCATGGGTGTTATTTTAGTAACTAAAGACTATCTTGGCTTAGTTTTTACAAACAGCAAGCCTTTGCTTGAGGCGGTTTCAGAACTAGGAAACCTCCTTGCCGTGACAATGATTCTTAACAGTGTTCAACCAGTGATTTCAGGTGTTGCTGTTGGAGGTGGGTGGCAGGCCCTGGTGGCTTACATCAATTTAGGTTGCTATTATCTGTTTGGGCTTCCACTGGGTTATGTTCTTGGTTATACAGCAAATTTGGGGGTTAAGGGACTTTGGGGAGGGATGATATGTGGAATTGTTCTCCAGACCTTGGTGCTCTTGTTGATACTTTACAAAACCAATTGGAACAAAGAGGTTGAAGATACATCTGAACGAGTAAGGAAATGGGGTGGGCAAGACATCCAAGTTGATAACACAGTGGCTTCGGCATAA 1479 0.4381 MDAPLLHGVGQEAAAEEGDYAAVKNFQDARKVFWTESVRIWRIAVPIIFNIWCQYGVNSITSIFVGHLGDLELSAVSLINSVIGTFSFGFMLGMGSATETLCGQAFGAGQVGMLGVYMQRSWVILFVTSICLLPIYIFAGPILTLLGQQKDIVDLAGHFSLLVIPQFLSLSLNFPTQKFLQAQSKVNVIAWIGFVALIVHVGMLWLLIYVLDLGLTGAALAFDITSWGISVAQLVYVVVWCKDVWTGLTWLAFKDIWAFVKLSLASAVMLCLEVWYMMSLIVLAGHLGNAVIAVDSISICMNFNGWENMIFIGVNAAISVRVSNELGLRRPRTAKFCVYVTIIQSLLIGIFFMGVILVTKDYLGLVFTNSKPLLEAVSELGNLLAVTMILNSVQPVISGVAVGGGWQALVAYINLGCYYLFGLPLGYVLGYTANLGVKGLWGGMICGIVLQTLVLLLILYKTNWNKEVEDTSERVRKWGGQDIQVDNTVASA* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0658 492 PANTHER MULTIDRUG RESISTANCE PROTEIN 32 474 - -
Lja5g0658 492 CDD MATE_eukaryotic 36 470 IPR045069 GO:0042910|GO:1990961
Lja5g0658 492 PANTHER PROTEIN DETOXIFICATION 32 474 - -
Lja5g0658 492 Pfam MatE 266 428 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja5g0658 492 Pfam MatE 46 204 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja5g0658 492 TIGRFAM matE: MATE efflux family protein 46 441 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0658 Lja-Chr5 5935228 5939420 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0658 K03327 - gmx:100780766 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0658 5 5935228 5939420 Lja5g0658 5 5935228 5939420 ECH
Lja2g2648 2 36923482 36931558 Lja5g0658 5 5935228 5939420 PCT