Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0598 ATGGGCCAGAGGGGTAAATCTGATGATCACACTAAAGAAGATTGCAAGGAAACAAGTGCATTGGTGGTTTGTTTTGGTGAATTGTTAATAGACTTTGTGCCAACAGTGGGTGGAGTGTCACTAGCTGAAGCACCTGCTTTCAAGAAAGCTCCTGGTGGTGCTCCTGCTAATGTGGCTGTTGGAATTTCAAGGTTGGGGGGTTCATCTGCATTCATTGGCAAGGTTGGGGCAGATGAATTTGGGTATATGTTGGCTGATATTTTAAAGCAGAATAATGTTGAGACGTCTGGCATGCGGTTTGATCCAGACGCAAGAACTGCATTAGCTTTTGTTACGCTTAGAGCTGATGGGGAGCGTGAGTTCTTGTTTTTCCGAAATCCTAGTGCAGATATGCTGCTTCATGAGTCAGAGCTTGATCAGAATCTCATAAAGAAGGCTAAAGTATTCCATTATGGTTCCATCAGCTTGATTGATGAACCATGCAAGCTAGCTCATCTTGCTGCTTTGAGAATCGCTAAAGAATCTGGCTGCATTCTTTCGTATGATCCGAATTTGAGGTTGGCTCTATGGCCATCAGCTGAGGCTGCTCGAAAAGGCATAATGAGCATATGGGATCAAGCCGATGTCATAAAGATAAGTGAAGATGAGATCACATTTTTGACCTGTGGTGATGATCCTTATGATGATAATGTTGTATTAAAGAAGCTTTTTCATCCTAATCTCAAGCTTTTAATTGTTACTGAAGGGTCAGAGGGTTGTAGATATTACACAAAGGAATTCAGGGGCAGGGTTACAGGTGTTACAGTTAAACCTGTTGACACAACTGGTGCTGGTGATGCATTTGTTAGTGGGATCATCAACAGCATAGCTTCTGACCCAAGTCTTTTCCAGGATGAGAAGCGTCTCCGAGAAGCTCTATATTTTGCCAATGTATGTGGTGCCATCACTGTAACAGAGAGAGGGGCTATTCCAGCACTTCCTACAAAAGAAGCTGTCCTGCAATTTGCTGCAGTATAG 1017 0.4317 MGQRGKSDDHTKEDCKETSALVVCFGELLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGADEFGYMLADILKQNNVETSGMRFDPDARTALAFVTLRADGEREFLFFRNPSADMLLHESELDQNLIKKAKVFHYGSISLIDEPCKLAHLAALRIAKESGCILSYDPNLRLALWPSAEAARKGIMSIWDQADVIKISEDEITFLTCGDDPYDDNVVLKKLFHPNLKLLIVTEGSEGCRYYTKEFRGRVTGVTVKPVDTTGAGDAFVSGIINSIASDPSLFQDEKRLREALYFANVCGAITVTERGAIPALPTKEAVLQFAAV* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0598 338 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 52 76 IPR002173 GO:0016773
Lja5g0598 338 Pfam pfkB family carbohydrate kinase 20 328 IPR011611 -
Lja5g0598 338 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 273 286 IPR002173 GO:0016773
Lja5g0598 338 PANTHER FRUCTOKINASE-7-RELATED 14 336 - -
Lja5g0598 338 CDD bac_FRK 21 323 - -
Lja5g0598 338 PANTHER HEXOKINASE FAMILY MEMBER 14 336 - -
Lja5g0598 338 Gene3D - 18 338 IPR029056 -
Lja5g0598 338 PRINTS Ribokinase signature 244 255 IPR002139 GO:0016301
Lja5g0598 338 PRINTS Ribokinase signature 47 66 IPR002139 GO:0016301
Lja5g0598 338 PRINTS Ribokinase signature 202 217 IPR002139 GO:0016301
Lja5g0598 338 SUPERFAMILY Ribokinase-like 22 335 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0598 Lja-Chr5 5364091 5367713 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0598 K00847 - gmx:100818404 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2420 2 29951875 29955800 Lja5g0598 5 5364091 5367713 ECH
Lja5g0598 5 5364091 5367713 Lja5g0598 5 5364091 5367713 ECH