Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2420 ATGGCGAACTCCACCGCTTCAGGTAAATCCAACGGCCTCGCGAAAGAAGACTGCAAGGAAACAAGTTCACTGGTTGTTTCCTTTGGAGAAATGTTAATAGATTTTGTGCCGACCGTGGCAGGAGTGTCACTGGCTGATGCACCTGCTTTCAAGAATGCTCCTGGTGGAGCTCCTGCCAATGTAGCTGTTGGTATCTCTAGACTGGGGGGTTCATCTGCTTTTATAGGCAAGGTTGGAGCAGATGAGTTTGGTTACATGTTGGCTGACATTTTAAAGAAAAACAATGTTGATACATCTGGCATGAGGTTTGACTCAAATGCAAGAACTGCGTTAGCTTTTGTTACTCTTAGAGCTGATGGCGAGCGTGAGTTTTTGTTTTTCCGGAATCCAAGTGCTGATATGCTTCTTCACGAGTCGGAACTTGATAAAAATCTCATAAAACAGGCTAGCATTTTCCATTACGGCTCTATCAGCTTGATTGATGATCCGTGTAAGTCAGCTCACCTTGCTGCTATGAGAATTGCCAAAAGCTCCGGTTGCATTCTATCTTATGATCCAAATTTGAGATTGGCACTATGGCCATCAGCAGAGGCTGCTCGAAAAGGCATAATGAATATTTGGGATCAAGCCGATATCATAAAGATAAGTGAGGATGAGATTACATTTTTGACTGGAGGTGAAGACCCTTATGATGATAATGTTGTTCTGACAAAACTTTTTCATCCTAATCTCAAGCTTTTAATTGTTACTGAAGGTTCAGCGGGTTGTAGATATTACACCAAGGAATTCAGGGGCAGAGTTGCTGGTGTTAAAGTTAAACCTGTGGATACAACTGGTGCTGGTGATGCATTTGTTAGTGGGATTCTGTACAGTATAGCTTCCGACCTGAGTATTTTTCAGGATGAGAAACGACTTCGAAAGGCTTTATATTTTGCTAATGTATGTGGTGCCATCACTGTAACTGAGAGAGGTGCAATTCCTGCTCTTCCTACAAAGGAAGCAGTCTTGCAATTCTTGCTAGAAGCAGCTGTAATACAACAGGACTAA 1047 0.425 MANSTASGKSNGLAKEDCKETSSLVVSFGEMLIDFVPTVAGVSLADAPAFKNAPGGAPANVAVGISRLGGSSAFIGKVGADEFGYMLADILKKNNVDTSGMRFDSNARTALAFVTLRADGEREFLFFRNPSADMLLHESELDKNLIKQASIFHYGSISLIDDPCKSAHLAAMRIAKSSGCILSYDPNLRLALWPSAEAARKGIMNIWDQADIIKISEDEITFLTGGEDPYDDNVVLTKLFHPNLKLLIVTEGSAGCRYYTKEFRGRVAGVKVKPVDTTGAGDAFVSGILYSIASDLSIFQDEKRLRKALYFANVCGAITVTERGAIPALPTKEAVLQFLLEAAVIQQD* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2420 348 CDD bac_FRK 24 326 - -
Lja2g2420 348 SUPERFAMILY Ribokinase-like 25 339 IPR029056 -
Lja2g2420 348 PRINTS Ribokinase signature 205 220 IPR002139 GO:0016301
Lja2g2420 348 PRINTS Ribokinase signature 50 69 IPR002139 GO:0016301
Lja2g2420 348 PRINTS Ribokinase signature 247 258 IPR002139 GO:0016301
Lja2g2420 348 Pfam pfkB family carbohydrate kinase 24 331 IPR011611 -
Lja2g2420 348 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 55 79 IPR002173 GO:0016773
Lja2g2420 348 Gene3D - 21 346 IPR029056 -
Lja2g2420 348 PANTHER FRUCTOKINASE-7-RELATED 16 341 - -
Lja2g2420 348 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 276 289 IPR002173 GO:0016773
Lja2g2420 348 PANTHER HEXOKINASE FAMILY MEMBER 16 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2420 Lja-Chr2 29951875 29955800 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2420 K00847 - gmx:100778752 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2420 2 29951875 29955800 Lja5g0598 5 5364091 5367713 ECH
Lja2g2420 2 29951875 29955800 Lja2g2420 2 29951875 29955800 ECH