Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0446 ATGATGAAGCTTCGGAGATTCTCGCTGGGTTTCCTTTTAGGGTTTCTGTTGTTGCTGTCGGTGACGCCGTCGTCAATGGCGAGATTTGTGGTGGAGAAGAACAGTTTGACGGTGACTTCGCCGGAGGATATCAAGGGTACCCACGATAGCGCGATTGGCAACTTTGGGATTCCGCAGTACGGTGGTAGCATGGCTGGGAACGTTGTGTACCCCAAGGATAACCATAAGGGTTGTAAGGAGTTCGATGAGTCTGGGATTTCCTTTAAATCTAAGCCTGGAGCTCTTCCCACTATTGTTTTGCTCGATCGTGGAAATTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGAGCTTCTGCTGTTCTTGTTGCGGATGATATTGAGGAAAAATTAATTACCATGGACACGCCTGAAGAGGATGGATCATCTGCAAAATACATAGAGAACATAACAATACCATCAGCACTCATTGAAAAAAGCTTTGGTGAAAAATTAAAGAAGTCCATAAGTGGTGGGGAGATGGTCAATGTAAACCTTGATTGGAGGGAGGCTGTCCCCCACCCTGATGATCGTGTGGAATATGAGTTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGTGATATGTTGATGGAATTTGTGAAGGATTTCAAGGGTGCGGCTCAGATTTTAGAGAAAGGTGGATATACTCAGTTTACACCCCATTATATAACTTGGTATTGTCCCAAGGCATTCACATTAAGCAAACAGTGCAAGTCCCAGTGCATAAATCATGGAAGATATTGCGCTCCAGATCCTGAGCAGGACTTTAGCACTGGTTATGATGGGAAAGATGTGGTTATTGAAAATTTAAGGCAGCTATGTGTTTATAAGGTGACAAGTGAAGCCAAAAAACCTTGGCTTTGGTGGGACTATGTTACTGATTTTCAAATTAGATGCCCAATGAAGGAGAAAAAGTACAACAAGAAATGTGCTGATGCTGTCATTGAATCACTAGGTCTTGATAATAAGAAGATTGAAAGGTGCATGGGAGATCCAGATGCTGATTCTGATAATCCTGTTTTGAAAGAAGAGCAAGATGCCCAAGTTGGGAAAGGATCCCGAGGTGATGTTACCATATTGCCTACTCTCGTAGTCAATAATCGACAATATCGAGGGAAATTAGAGAAAGGTGCTGTTATGAAAGCTATTTGTTCTGGTTTTGAAGAAACTACTGAACCAGCTGTTTGTTTGAGCAGTGATGTGGAGACAAATGAATGCTTGGAAAATAATGGTGGTTGTTGGAAGGATAAGGCAGCTAACATCACTGCATGCAAGGATACTTTCCGTGGGCGAGTATGTGAGTGCCCCTTGGTGGATGGTGTGCAGTTCAAAGGAGATGGTTATACAACCTGCGAAGCTAGTGGACCTGGGCGATGCAAGATAAAGAATGGAGGATGTTGGCATGAAGCCCGGAATGGACATGCATTTTCTGCTTGTGTGGACGATGGAGAAGTTAAATGCCAATGTCCTGCAGGGTTTAAAGGTGACGGTGTCAAAAATTGTCAAGACGTTGATGAATGTAAAGAGAAGAAAGCTTGCCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCAGTTGCAGTGGGGATCTTCTGTATATTAGGGACCATGATACCTGCATAAGTAAAACTGCTAGTCAAGGAGGAAGATCTGCTTGGGCTGCTTTTTGGGTCATTATAGCTGGCTTAGTTCTATCTGCTGGTGGGGGATACCTTATATACAAATACAGAATAAGGTCATATATGGATTCAGAAATCAGAGCCATCATGGCACAGTACATGCCCTTGGACAGTCAAGCAGAAGTTGTAAATCATGTGAACGATGAAAGAGCATGA 1899 0.4355 MMKLRRFSLGFLLGFLLLLSVTPSSMARFVVEKNSLTVTSPEDIKGTHDSAIGNFGIPQYGGSMAGNVVYPKDNHKGCKEFDESGISFKSKPGALPTIVLLDRGNCFFALKVWNAQKAGASAVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKSFGEKLKKSISGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPKAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVYKVTSEAKKPWLWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGLDNKKIERCMGDPDADSDNPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLEKGAVMKAICSGFEETTEPAVCLSSDVETNECLENNGGCWKDKAANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPGRCKIKNGGCWHEARNGHAFSACVDDGEVKCQCPAGFKGDGVKNCQDVDECKEKKACQCPECSCKNTWGSYDCSCSGDLLYIRDHDTCISKTASQGGRSAWAAFWVIIAGLVLSAGGGYLIYKYRIRSYMDSEIRAIMAQYMPLDSQAEVVNHVNDERA* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0446 632 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 15 611 - -
Lja5g0446 632 Gene3D - 26 190 - -
Lja5g0446 632 ProSitePatterns Calcium-binding EGF-like domain signature. 520 546 IPR018097 GO:0005509
Lja5g0446 632 Gene3D Laminin 413 469 - -
Lja5g0446 632 CDD PA_VSR 54 181 - -
Lja5g0446 632 Gene3D Laminin 474 554 - -
Lja5g0446 632 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 15 611 - -
Lja5g0446 632 Pfam Complement Clr-like EGF-like 503 523 IPR026823 -
Lja5g0446 632 Pfam PA domain 65 167 IPR003137 -
Lja5g0446 632 CDD EGF_CA 520 548 - -
Lja5g0446 632 SUPERFAMILY PA domain 35 174 IPR046450 -
Lja5g0446 632 SMART egfca_6 520 562 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0446 Lja-Chr5 3918504 3924143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0446 27 632 Miscellaneous Gene Families AT2G14740 84.488 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0446 - - gmx:100803958 1221.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0446 5 3918504 3924143 Lja5g0446 5 3918504 3924143 ECH
Lja1g6059 1 111513782 111517967 Lja5g0446 5 3918504 3924143 PCT