Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6059 ATGTGTCAATGGCGAGATTCGTGGTGGAAAAGAACAGCTTGTCGTCGGACAAGATTAATGGGACATACGATACTGCCATCGCCAACTTCGGGATACCTCAGTACCTTGGGCGGGAACGTCATGTATCCCGAGAGCGAGAGTAACAACCACGGCTGTAAAGACTTTGAACCTGACTCCTTCAAATCACACCCCGGTGTTCTTCCTCCTACCATCCTTTTACTCGATCGCGGAAATTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGAGCTTCTGCTGTTCTTGTTGCAGATAATGTTGAGGAACCTTTAATAACTATGGACACTCCTCAAGAGTATCAGGATGGGTCATCTCAGAAATACATAGACAACATAACAATACCATCTGCTCTCATTGAAAAACGTTTGGCTCAAAAATTAAAGGATGCCATAAGTGATGGGGACATTGTCACTGTAAACCTTGATTGGCGAGAGGCTGTCCCGCATCCTGATGATCGTGTGGAGTATGAGTTGTGGACCAACAGCAATGATCAGTGTAGACTCAAATGTCAGGTGTTGATGGAATTTATGAAGGATTTCAAGGGGGCAGCGCAGATACTAGAGAAAGGCGGTTACACTCATTTTACACCCCACTATATAACTTGGTACTGTCCTAATGCCTTCACGTTCAGTAAACAGTGTAAGTCTCAATGCATAAACAATGGGAGATATTGCGCTCCGGATCCTGAGCAGGACTTCACTACAGGTTATGATGGGAAAGATGTGGTTATTCAAAATTTAAGGCAGCTATGTGTTTTCAAGGTTGCAAATGAAACCAAAAACCCTTGGCTGTGGTGGGACTATGTAACTGATTTTCAAATCAGATGCCCAATGAAGGAGAAAAAGTACAATAAGGAATGTGCAAATGCTGTCCTAAAATCACTGGGTCTTGATATCGCAAAGATTGAAAAATGCATGGGAGATCCAAATGCTGATACTGAAAATTCTATTTTGAAGGAAGAGCAAAATGCCCAAGTTGGAAAGGGATCCCGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAACAATCGACAATATCGAGGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATTTGTTCTGGGTTTGAGGAAACTACTGAACCAGCTGTTTGTTTAAGCAGTGATATGGAGACAAATGAGTGCTTGACGAACAATGGTGGTTGTTGGCAGGATAAAGCGGCTAACGTTACTGCATGCAAGGATACATTCCGTGGCCGAAAATGTGAGTGCCCCCTGGTTGGTGGTGTGCAGTTCAAAGGAGATGGTTATACGACTTGTGAAGTCAGTGGATTTGGGCGTTGCAAGATTAACAATGGAGGCTGTTGGCATGATGCCCGGAATGGACATGCATTTTCAGCTTGTTTGGATAATGGAGGGGTTAAATGCCAGTGTCCTACAGGGTTTAGAGGTGATGGTGTCAAAAACTGTGAAGACATTGATGAATGCAAAGAGAAGAAAGCTTGTCAGTGCCCCCAATGTAGCTGCAAGGATACTTGGGGCAGCTATAACTGCAGTTGTACTGGAGATCTTCTTTATATTAAGGACTATGATACTTGCATAAGTAAATCTGGGAGTCGGGGAAGATCTTCTTTGGCTGCTTTTTGGGTCATTTTAATTGGCTCAGTAATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTATAGAATAAGGCAATACATGGATTCCGAAATCAGAGCAATCATGGCACAATATATGCCCTTGGACAGCCAAGCAGAAGTTCCAAATCACGTCAATAATCAAAGGGCATGA 1821 0.4349 MCQWRDSWWKRTACRRTRLMGHTILPSPTSGYLSTLGGNVMYPESESNNHGCKDFEPDSFKSHPGVLPPTILLLDRGNCFFALKVWNAQKAGASAVLVADNVEEPLITMDTPQEYQDGSSQKYIDNITIPSALIEKRLAQKLKDAISDGDIVTVNLDWREAVPHPDDRVEYELWTNSNDQCRLKCQVLMEFMKDFKGAAQILEKGGYTHFTPHYITWYCPNAFTFSKQCKSQCINNGRYCAPDPEQDFTTGYDGKDVVIQNLRQLCVFKVANETKNPWLWWDYVTDFQIRCPMKEKKYNKECANAVLKSLGLDIAKIEKCMGDPNADTENSILKEEQNAQVGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTEPAVCLSSDMETNECLTNNGGCWQDKAANVTACKDTFRGRKCECPLVGGVQFKGDGYTTCEVSGFGRCKINNGGCWHDARNGHAFSACLDNGGVKCQCPTGFRGDGVKNCEDIDECKEKKACQCPQCSCKDTWGSYNCSCTGDLLYIKDYDTCISKSGSRGRSSLAAFWVILIGSVMIAGGAFLVYKYRIRQYMDSEIRAIMAQYMPLDSQAEVPNHVNNQRA* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6059 606 Pfam Complement Clr-like EGF-like 478 498 IPR026823 -
Lja1g6059 606 Gene3D Laminin 449 529 - -
Lja1g6059 606 SUPERFAMILY PA domain 70 149 IPR046450 -
Lja1g6059 606 CDD EGF_CA 495 523 - -
Lja1g6059 606 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 32 585 - -
Lja1g6059 606 ProSitePatterns EGF-like domain signature 2. 479 493 IPR000742 -
Lja1g6059 606 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 32 585 - -
Lja1g6059 606 ProSitePatterns Calcium-binding EGF-like domain signature. 495 521 IPR018097 GO:0005509
Lja1g6059 606 Gene3D - 26 165 - -
Lja1g6059 606 SMART egfca_6 495 537 IPR001881 GO:0005509
Lja1g6059 606 Pfam PA domain 39 142 IPR003137 -
Lja1g6059 606 Gene3D Laminin 388 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6059 Lja-Chr1 111513782 111517967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6059 32 606 Miscellaneous Gene Families AT2G14740 76.256 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6059 - - gmx:100777949 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g6059 1 111513782 111517967 Lja5g0446 5 3918504 3924143 PCT