Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4039 ATGGCAATCAGACAAGAAAGATGTAACCAGTGTGGAACACTACTAGTGGTTCCACCAGAGGTTCAAGCCTTTAAATGTGCAGTGTGCCATGGCATCACAAAGATTGTACTCCCAGGGTCACTGAGTCAAGCCTACAACTCTGTTTCTCATGTTGCTGGTCGTTTTAGAGGCTTCATCAACACTATTATGATGACTAGTTCAGTTAACAACAACAATCAAGGTTATGGGGCAACACCACATTTTGGGTATTATCTTCAGCCTCAGCCACTAAGGCCCTTGATTCCTCCTTCTGCATTTGGCTCAAAGCGTGCAGTGTTGTGTGGAATATGCTACCATGGAAAGAGTTACAGGCTTAAGGGCTCCTTGAATGATGTAAAGTGCATGAAGTACTTTCTGATTAACCACTTTGGGTTTCCAAGTGACTCCATCCTCATGCTCACTGATGATAAGGAGGAGAAGAACCCACTAAGAATCCCAACGAAATACAACATTCAAATGGCTTTGAAGTGGCTGATTGAGGGTAGCAGATCAGGGGACTCATTGGTGTTCCACTTCTCAGGACATGGTACAAGGGAAGTGAAGAGTGAAGGATATGATAAAGCAATTTGTCCTGTTGATTATGAGCACAAGGGGAAGATACTCAGTGATGAGATTAACTCTGCAATTGTTAGGCCACTACCACTTGGTGCTATACTTCATGCCATCATTGATGCGTGCCACAGTGGCACTGTCCTAGATTTATCATTTGTGTGCAAGATGAACAGGGAAGGGTATTACAGATGGGAGGATCATAGAATTCCTAGTGCTATAACAAGAGGAGGGATGGCAATTTGTGTTTCAGCTTGTGATGATGGTCAAATCTCTGTAGATACATCTGCCTTAAGTGGTAAAGAAGTGACTGGTGCCTTGACTTATAGTTTCATCCAAACAGTGCAAAATGAACCTGGATTGACTTATGGCCACTTGCTCAGTGTGATGCGTTCAACCATCAAGGGGACTAGAACAGGCATAGTTGTTCTAAATGGTCCAATTGCTTCTCTGTTAAATACACTTCTTGGCCAGCACATCACGCAGGAGCCACAACTATCGTCTTCGGAGATGTTTGACATGTATAAAAAGCAGTTTGTACTATGA 1134 0.4321 MAIRQERCNQCGTLLVVPPEVQAFKCAVCHGITKIVLPGSLSQAYNSVSHVAGRFRGFINTIMMTSSVNNNNQGYGATPHFGYYLQPQPLRPLIPPSAFGSKRAVLCGICYHGKSYRLKGSLNDVKCMKYFLINHFGFPSDSILMLTDDKEEKNPLRIPTKYNIQMALKWLIEGSRSGDSLVFHFSGHGTREVKSEGYDKAICPVDYEHKGKILSDEINSAIVRPLPLGAILHAIIDACHSGTVLDLSFVCKMNREGYYRWEDHRIPSAITRGGMAICVSACDDGQISVDTSALSGKEVTGALTYSFIQTVQNEPGLTYGHLLSVMRSTIKGTRTGIVVLNGPIASLLNTLLGQHITQEPQLSSSEMFDMYKKQFVL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4039 377 PANTHER ICE-LIKE PROTEASE (CASPASE) P20 DOMAIN PROTEIN 2 375 - -
Lja4g4039 377 Gene3D - 85 377 - -
Lja4g4039 377 Pfam Caspase domain 102 369 - -
Lja4g4039 377 Pfam LSD1 zinc finger 8 31 IPR005735 -
Lja4g4039 377 PANTHER METACASPASE-4 2 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4039 Lja-Chr4 73536806 73539556 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4039 K22684 - gmx:100783197 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4039 4 73536806 73539556 Lja4g4039 4 73536806 73539556 ECH
Lja4g4039 4 73536806 73539556 Lja6g3274 6 61075094 61077258 PCT