Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4006 ATGGAGGATGTGGAGAAGGTGAAAGCAGAGGCACTGCAAATGATGGGAGTATTCCAAGTGCTACCAAGGCTCGTTGTTTTCGATCTTGATTACACTCTTTGGCCTTTCTACTGTGAGTGCCGCTCCAAGCGGGACACACCTTCTTTGTACCCTCATGTCAAAGGCATCATGTATGCGCTCAAAGGTGAGGGGATTGATGTTGCCATTGCTTCTAAATCACCAACTCCTGACATAGCAACAACGTTTCTTGACAAACTCAGCATCAGCTCAATGTTTGTTACCAAGGAAATATTTTACAGCTGGCAAAACAAAACAGATCATTTTCAGAAAATCCATTCAAGCACTGGGGTGCCCTTTAAATCAATGCTCTTCTTTGATGATGATGATAATAACATTCAAGGGGTCTCAAAAATGGGAGTAACAAGCATTTTGGTCAGGAATGGGGTAAACCTTGGAGTCTATAAAGAAGGCCTTACAAAATTTTCTCTAAAGTGGGATGCATCAAAGGACAAGCAGGGAAGGCGTAAGTAA 531 0.4256 MEDVEKVKAEALQMMGVFQVLPRLVVFDLDYTLWPFYCECRSKRDTPSLYPHVKGIMYALKGEGIDVAIASKSPTPDIATTFLDKLSISSMFVTKEIFYSWQNKTDHFQKIHSSTGVPFKSMLFFDDDDNNIQGVSKMGVTSILVRNGVNLGVYKEGLTKFSLKWDASKDKQGRRK* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4006 176 Pfam Acid Phosphatase 21 41 IPR010036 GO:0016791
Lja4g4006 176 Pfam Acid Phosphatase 48 162 IPR010036 GO:0016791
Lja4g4006 176 TIGRFAM HAD-SF-IIIC: HAD phosphatase, family IIIC 24 138 IPR010033 -
Lja4g4006 176 SUPERFAMILY HAD-like 23 157 IPR036412 -
Lja4g4006 176 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 5 168 - -
Lja4g4006 176 Gene3D - 4 165 IPR023214 -
Lja4g4006 176 SFLD C1.5.2: MDP Like 5 168 - -
Lja4g4006 176 PANTHER MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 1 174 IPR010036 GO:0016791
Lja4g4006 176 CDD HAD_MDP-1_like 22 145 IPR035679 -
Lja4g4006 176 PANTHER MAGNESIUM-DEPENDENT PHOSPHATASE-LIKE PROTEIN 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4006 Lja-Chr4 73132350 73133831 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4006 K17619 - gmx:100795199 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4006 4 73132350 73133831 Lja6g3244 6 60813387 60814997 PCT