Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3250 ATGGCACCTTCTTACTGTGTGAATGAGAGGAAACCCTGTGTAGGATGGGTTGAGACATACTTCAATGACTGTCTTTGCACCATGAAAGATGACATCTCGTTCAGTCTTGGACTTACCAGTTTAGCATTCTGGGGAATAGCAGAAATCCCTCAAATCATCACCATTTTTCGCACCAAGTCCAACCATGGAATGTCCCTTGCCTTTCTCTGCACTTGGGTCGCTGGAGACATATGCAACCTGGTAGGTTGCCTTCTGGAACCAGCTACGCTGCCCACACAGTATTACACTGCATTGCTTTACATGAGCACCACGATCTTGTTAGTATCGCAAGTCATATATTTTGACTACATCAGTAGATGGTGTACACATCGTCACAACATCAACAACAAAGGGACTCATGAGGAAGAGGAAAGACCATTGAAACCGAAAGCTAGTGAGGAGTCTGAGATTCCAATACCAAATGGCACACCCAGAGCTGCACCTAGACGAGAGTATTACTATATGTCAGCAAGGTCATTGGCTGGAAGTGCCACTCCACCCTCGCTTAGCTACATAAGAGCTGCTAGAAGTGGCCCATCAGCCATGGAATTCAACGGCGCGGACTCTTCTTCTGACGATGAAGCACCTCCACCTACCTCTGCATCTCGTTCTCTAGCTGGAAGTTATGGAACATTTCTAGCAGCATCCCTTAACTTGCCCCTGAAGAGTGATGCTTTGAGACATTATGGATACACAGGATTTACTACAAGAAAGCTCTTACAGGGAGACGAGATACATAATGCAATTGGTCTTTGGTTGGGATGGCTCATGGCAGCTATCTATATAAGTAGTCGTCTTCCTCAAATATGGTTAAACATTAAAAGAGGGAGTGTGGAGGGCTTAAGTCCTTTCATGTTCATCTTTGCACTGGTAGCTAATGTTACATACGTAGGAAGTATTCTTGTACGAGCTACGGAATTCAAAAGCATCAAAGCTAATATGCCATGGTTGCTGGATGCCACCGTTTGCGTGACACTGGACATTTTTATAATATCGCAGTACATCTACTATAGATACTTTCAAAAGAGAGAAAGAGAAGCAAGTGATGATAGAGACTACAAAGAAGTGGGAAAAGCTGCTGCATCTTGA 1128 0.4424 MAPSYCVNERKPCVGWVETYFNDCLCTMKDDISFSLGLTSLAFWGIAEIPQIITIFRTKSNHGMSLAFLCTWVAGDICNLVGCLLEPATLPTQYYTALLYMSTTILLVSQVIYFDYISRWCTHRHNINNKGTHEEEERPLKPKASEESEIPIPNGTPRAAPRREYYYMSARSLAGSATPPSLSYIRAARSGPSAMEFNGADSSSDDEAPPPTSASRSLAGSYGTFLAASLNLPLKSDALRHYGYTGFTTRKLLQGDEIHNAIGLWLGWLMAAIYISSRLPQIWLNIKRGSVEGLSPFMFIFALVANVTYVGSILVRATEFKSIKANMPWLLDATVCVTLDIFIISQYIYYRYFQKREREASDDRDYKEVGKAAAS* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3250 375 SMART ctns 276 307 IPR006603 -
Lja4g3250 375 SMART ctns 46 77 IPR006603 -
Lja4g3250 375 MobiDBLite consensus disorder prediction 130 158 - -
Lja4g3250 375 MobiDBLite consensus disorder prediction 195 216 - -
Lja4g3250 375 MobiDBLite consensus disorder prediction 130 145 - -
Lja4g3250 375 MobiDBLite consensus disorder prediction 196 216 - -
Lja4g3250 375 Pfam PQ loop repeat 32 88 IPR006603 -
Lja4g3250 375 Pfam PQ loop repeat 263 320 IPR006603 -
Lja4g3250 375 Gene3D - 35 125 - -
Lja4g3250 375 Gene3D - 263 366 - -
Lja4g3250 375 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 1 375 - -
Lja4g3250 375 PANTHER PQ-LOOP PROTEIN/TRANSMEMBRANE FAMILY PROTEIN 1 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3250 Lja-Chr4 61249688 61255204 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3250 K23678 - gmx:100789634 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3250 4 61249688 61255204 Lja4g3250 4 61249688 61255204 ECH
Lja2g0407 2 3722318 3726083 Lja4g3250 4 61249688 61255204 PCT