Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0407 ATGGCACCGCCGTCTTACTGTGTGAATGAGGGTAAAGCATGTGTGGGTTGGGTTCAGAAATACTTTAGTGACTGTCTGTGCAACCTGAGTGATGAAATCTCGTTCGGCTTCGGTTTCATCAGTTTAATATGTTGGGGAGTTGCAGAAATTCCACAGATATTCACTAACTTCCAAGCTAAGTCCAGCCATGGTGTTTCTCTTACATTTCTCCTCACTTGGGTTGCAGGCGACGTTTTCAACCTGGTGGGTTGCCTCCTGGAGCCGGCTACGTTGCCGACCCAGTACTACACAGCTCTGCTTTACACAATCACTACGATCGTGTTAGTATTGCAAAGCTTCTATTATGACTACCTTTATAAATGGCGCAAGCGTCGTCAGAAGATTAACATTGAAGAGGTTTTTGAAGAAGAGAGCAAACCTTTGAGACCAAAGCCAGGCTCTAACTTAGGGGTTCCAATACAAAATGGCACACACAAGGCAGTTCCTCGACGGGAGTATTACTATGCGTCAGCGAGATCAATGATTGGTAGTGCCACTCCACCATGTCATGCCTACATTAGAGCTGCTAAAAGTGGCCCTTCAGCCATGAATTTGAACTTTGATTCATCTTCTGATGATGATGAATCTCCTCCACTTCCTTCTACACAGCCTAGACCTATCCCTCGTTCTCTGGGAAGCTATGGAACTTTTCTAGCAACAGCAGTTAACTTTCCCTTGACGGGGAGTGCTTTATGCATAAGATTGAGTGGAAGAAAACTACTCCTTCAGGAGCATGACATGCACAGTGCTTTGGGTCAATGGTTGGGATGGCTCATGGCTGCTATCTATACGGGTGGTCGCCTCCCTCAAATATGGTTGAATATCAAAAGAGGGAGTGTAGAGGGATTGAATCCTCTCATGTTCATCTTTGCACTAATTGCCAATGCCACTTACATTGGAAGTATTCTTGTACGAACTACAGAATGGGAAAGCATCAAAGCGAATATGCCATGGTTGCTAGATGCCATAGTTTGCGTGGCATTGGACCTATTTATAATATTACAGTACATCAACTACAGATATATACGGAAGAAACCAACAAGTGCTGATGATGGCAAATATGAAAACTACAAAGAAGACAGAAAAAGTGTCGTGTATTGA 1140 0.4395 MAPPSYCVNEGKACVGWVQKYFSDCLCNLSDEISFGFGFISLICWGVAEIPQIFTNFQAKSSHGVSLTFLLTWVAGDVFNLVGCLLEPATLPTQYYTALLYTITTIVLVLQSFYYDYLYKWRKRRQKINIEEVFEEESKPLRPKPGSNLGVPIQNGTHKAVPRREYYYASARSMIGSATPPCHAYIRAAKSGPSAMNLNFDSSSDDDESPPLPSTQPRPIPRSLGSYGTFLATAVNFPLTGSALCIRLSGRKLLLQEHDMHSALGQWLGWLMAAIYTGGRLPQIWLNIKRGSVEGLNPLMFIFALIANATYIGSILVRTTEWESIKANMPWLLDAIVCVALDLFIILQYINYRYIRKKPTSADDGKYENYKEDRKSVVY* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0407 379 SMART ctns 47 78 IPR006603 -
Lja2g0407 379 SMART ctns 278 309 IPR006603 -
Lja2g0407 379 Pfam PQ loop repeat 264 322 IPR006603 -
Lja2g0407 379 Pfam PQ loop repeat 33 89 IPR006603 -
Lja2g0407 379 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 5 376 - -
Lja2g0407 379 Gene3D - 36 132 - -
Lja2g0407 379 Gene3D - 265 367 - -
Lja2g0407 379 MobiDBLite consensus disorder prediction 197 221 - -
Lja2g0407 379 PANTHER PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN 5 376 - -
Lja2g0407 379 MobiDBLite consensus disorder prediction 197 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0407 Lja-Chr2 3722318 3726083 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0407 K23678 - gmx:100815310 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0407 2 3722318 3726083 Lja2g0407 2 3722318 3726083 ECH
Lja2g0407 2 3722318 3726083 Lja4g3250 4 61249688 61255204 PCT