Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3249 ATGCTCAAATCCCACCACATCTACCAACAACCACCACCACCAATGGCAGTTTCCACCACACTTTTCACCACATTCTCCTTCTTCCTCCTCCTCCTCCTCCTCCTCCCCTTAAACACCACCGCAGAACACTTCAAGGAAGCACCAAAGTTCTACAACTCCCCAAACTGCCCCTCCATTGACCCCCAAAATGTCACGTGCTCCACCGACGCTGTCCACGTGACTATGACCCTCGACGCCTCCTACCTTCGCGGCTCCATGGCTGCCATCCTCTCCGTCCTGCAACACTCCTCCTGCCCGGAAAACACCGTCTTCCACTTCCTCTCCGCCGCCTCCGCCGCCACCCTCAACAGAACCATAGCCACCTCATTCCCCTACTTAAAATTCCAAATCTACCCCTTCGACGACGCCGCCGTCGCCGGCCTCATCTCCACCTCCATCCGCTCCGCCCTCGACTCCCCACTCAACTACGCCCGCATCTCCCTCCCCACCATCCTCCCGCAATGCCTCACCAGAGTCGTCTACCTTGACTCCGACCTCGTCCTCGTCGACGACATCGCCAAGCTCGCCGCCACGCCGTTCCTCCCCGGCACCGTCCTCGCCGCGCCGGAGTATTGCAACGCGAACTTCACCAACTACTTCACTCCATCATTCTGGTCCAACCCTTCACTCTCCCTCACATTCGCCGACCGCAATGCCTGCTACTTCAACACCGGCGTAATGGTCGTTGATCTCTCCCGGTGGCGCGCCGGCAACTACGTGACAGAGATCCGGGAGTGGATGGAGCTCCAGAAGAGGATGCGGATCTACGAGCTCGGATCTCTGCCGCCGTTTTTGCTGGTTTTCGCCGGGAGGATCACGCCGGTGGATCACCGGTGGAACCAGCACGGGCTCGGCGGCGACAATTTCCGTGGGCTTTGCCGGGATCTTCATCCGGGCCCAGTGAGCCTGCTGCATTGGAGTGGGAAGGGAAAGCCATGGGCCAGGCTTGATGCTAACAGGCCTTGTCCACTTGATACTTTATGGGCTCCCTATGATCTGCTCAAGGCTCCTTTTCATATTTTCACGTAG 1068 0.5871 MLKSHHIYQQPPPPMAVSTTLFTTFSFFLLLLLLLPLNTTAEHFKEAPKFYNSPNCPSIDPQNVTCSTDAVHVTMTLDASYLRGSMAAILSVLQHSSCPENTVFHFLSAASAATLNRTIATSFPYLKFQIYPFDDAAVAGLISTSIRSALDSPLNYARISLPTILPQCLTRVVYLDSDLVLVDDIAKLAATPFLPGTVLAAPEYCNANFTNYFTPSFWSNPSLSLTFADRNACYFNTGVMVVDLSRWRAGNYVTEIREWMELQKRMRIYELGSLPPFLLVFAGRITPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDTLWAPYDLLKAPFHIFT* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3249 355 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 21 352 - -
Lja4g3249 355 PANTHER HEXOSYLTRANSFERASE 21 352 - -
Lja4g3249 355 SUPERFAMILY Nucleotide-diphospho-sugar transferases 71 347 IPR029044 -
Lja4g3249 355 Pfam Glycosyl transferase family 8 72 328 IPR002495 GO:0016757
Lja4g3249 355 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 72 335 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3249 Lja-Chr4 61240863 61242529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3249 26 353 Glycosyltransferase AT3G50760 69.345 3.15e-173 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3249 K20893 - gmx:100783054 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3249 4 61240863 61242529 Lja4g3249 4 61240863 61242529 ECH
Lja2g0409 2 3743595 3745009 Lja4g3249 4 61240863 61242529 ECH
Lja2g0409 2 3743595 3745009 Lja4g3249 4 61240863 61242529 PCT