Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0409 ATGAAATCCACCACCATTCGCCATGCCTTTCATTTCTACCTCCTCCTCTTCCTCTGTAGTCACGCCACGTGTCACACCACCACCACCACCACCGTACAACGCTTCAAACAAGCCCCCAAATTCTACAACGCCCCAACCTGCGCCACCATACACCCCACCGACACACTATGCACCTCCTCCTCCGATGGAGTCCACGTGGCAATGACGCTGGACACCACCTACCTCCGTGGCTCCATGGCGGCGATCCTCTCCGTCCTCCAACACTCCTCCTGCCCGGAAAACATCATCTTCCATTTTGTAACCAGAACCCCTTCCTCCGCCACCGTCCTCGAGAACTCCTTCCCGTATCTCAAATTCCAAATCTACCCCTTCGACGACAACGCCGTTTCGGGATTCATCTCCACCTCCATCCGCTCCGCCCTCGATTGCCCTCTCAATTACGCCCGCAACTACCTGGCCACCCTCCTTCCAACCTGCGTTCACCGGATCGTCTACCTCGACTCCGACCTCGTCCTCGTCGACGACATTGCCAAGCTCGCCGCCACGCATCTACCGGATAACACCGTCATCGCCGCGCCGGAGTACTGCAACGCCGACTTCACTGCCTATTTCACTCCCACCTTCTGGTCTAATCCTTCCCTCTCGCTCACGTTTGAAGGTCGCAACCCTTGCTACTTCAATACCGGCGTCATGGTCATCGACTTAGAGCGGTGGCGGGCAGGGGACTACACGACCAAGATCCAGGAGTGGATGGAGCTTCAGAAGAGGATGCGGATCTACGAGCTGGGATCTTTGCCGCCGTTTTTGTTAGTATTTGCCGGGAACATTGGGCCGGTGGATCACCGGTGGAATCAGCACGGGCTCGGCGGGGATAATTTTCGCGGGCTTTGCAGGGATTTGCATCCGGGCCCGGTTAGCCTGCTGCATTGGAGTGGGAAGGGGAAACCGTGGGCCAGGCTCGATGCGAACCGCCCTTGCCCGCTGGATGCCTTATGGGCTCCCTATGATCTTCTCCAGACATCTTTTTCGCTCGAGGCTTAG 1041 0.5754 MKSTTIRHAFHFYLLLFLCSHATCHTTTTTTVQRFKQAPKFYNAPTCATIHPTDTLCTSSSDGVHVAMTLDTTYLRGSMAAILSVLQHSSCPENIIFHFVTRTPSSATVLENSFPYLKFQIYPFDDNAVSGFISTSIRSALDCPLNYARNYLATLLPTCVHRIVYLDSDLVLVDDIAKLAATHLPDNTVIAAPEYCNADFTAYFTPTFWSNPSLSLTFEGRNPCYFNTGVMVIDLERWRAGDYTTKIQEWMELQKRMRIYELGSLPPFLLVFAGNIGPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWAPYDLLQTSFSLEA* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0409 346 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 8 346 - -
Lja2g0409 346 PANTHER HEXOSYLTRANSFERASE 8 346 - -
Lja2g0409 346 Pfam Glycosyl transferase family 8 65 319 IPR002495 GO:0016757
Lja2g0409 346 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 65 326 IPR029044 -
Lja2g0409 346 SUPERFAMILY Nucleotide-diphospho-sugar transferases 64 337 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0409 Lja-Chr2 3743595 3745009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0409 11 344 Glycosyltransferase AT3G50760 71.053 3.16e-179 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0409 K20893 - gmx:100783054 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0409 2 3743595 3745009 Lja2g0409 2 3743595 3745009 ECH
Lja2g0409 2 3743595 3745009 Lja4g3249 4 61240863 61242529 ECH
Lja2g0409 2 3743595 3745009 Lja4g3249 4 61240863 61242529 PCT