Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3245 ATGAGTGCTGTGAATCTCAACACATGGGCACGCCCAAGTTTCGTCTTCAACCATGCCACCAGATCCAGATCCCAAACATTCTACCTCTACCATGGCCTTAGGAAGATACCCATTTCGCCGATTATCCCTGCAAAGCCGCAGAGGCAACAGCTTTCTTCTTCTTCCACGGTTTCCGCGGTGCTGACCAAGGAGGAGACGCTGGAGGCTGAGGAAGAGAAACCCACTTTCAATTTCAAGTCCTACATGATTCAGAAAGCCACCCAGGTTAACCAGGCCCTCGACGACGCCGTTTCGCTCCGGGACCCTGTCAAGATCCATGAAGCGATGCGGTACTCGCTCCTCGCCGGCGGGAAGAGAGTCAGGCCGGTTCTCTGCCTCGCCGCCTGCGAGCTCGTCGGAGGGACTGAGCCCATGGCGATGCCGGCGGCGTGCGCGCTTGAAATGATCCACACCATGTCGCTCATTCACGATGACCTCCCTTGTATGGACAACGACGATCTCCGGCGAGGGAAGCCGACGAACCATAAGGTTTTCGGGGAGGACGTGGCGGTCCTCGCCGGCGACGCGCTTCTCGCCTTCGCCTTCGAGCATATCGCCGTTGCCACCGCCGGCGTTTTGCCGGCGAGGGTTGTCCGGGCGGTCGGGGAGCTCGCGAAGTGCATCGGCTCCGAGGGTCTCGTCGCCGGCCAGGTCGTCGACATCAATTCTGAAGGCTTATCCGATGTGGGACTTGAGAGGCTCGAGTTTATTCATCTCCACAAAACCGCGGCGTTGCTTGAAGGTGCGGTTGTTCTCGGTGCCATTCTCGGTGGTGGGTCTGATGCAGAGGTTGAGAGGCTGAGGAAATTTGCTAGCTGCATTGGATTGTTGTTTCAGGTGGTTGATGATATTCTTGATGTGACAAAGTCTTCACAGGAATTGGGGAAAACTGCTGGAAAAGATTTGGTGGCTGATAAGGTTACTTACCCCAAGCTTTTGGGGATAGAGAAGTCCAAGGAGTTTGCTGAGAAGTTGAACCGTGATGCACAGGAACAACTCATTGGGTTTGATCCTCATAAAGCTGCTCCTTTGATTGCTTTAGCTAATTACATTGCTTACAGGCAAAACTAG 1110 0.5468 MSAVNLNTWARPSFVFNHATRSRSQTFYLYHGLRKIPISPIIPAKPQRQQLSSSSTVSAVLTKEETLEAEEEKPTFNFKSYMIQKATQVNQALDDAVSLRDPVKIHEAMRYSLLAGGKRVRPVLCLAACELVGGTEPMAMPAACALEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIAVATAGVLPARVVRAVGELAKCIGSEGLVAGQVVDINSEGLSDVGLERLEFIHLHKTAALLEGAVVLGAILGGGSDAEVERLRKFASCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSKEFAEKLNRDAQEQLIGFDPHKAAPLIALANYIAYRQN* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3245 369 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC-LIKE 1 369 - -
Lja4g3245 369 ProSitePatterns Polyprenyl synthases signature 1. 154 170 IPR033749 -
Lja4g3245 369 ProSitePatterns Polyprenyl synthases signature 2. 287 299 IPR033749 -
Lja4g3245 369 CDD Trans_IPPS_HT 105 367 IPR000092 GO:0008299
Lja4g3245 369 SFLD Polyprenyl Transferase Like 81 367 - -
Lja4g3245 369 Coils Coil 325 345 - -
Lja4g3245 369 SUPERFAMILY Terpenoid synthases 78 346 IPR008949 -
Lja4g3245 369 Gene3D Farnesyl Diphosphate Synthase 70 369 IPR008949 -
Lja4g3245 369 SFLD Isoprenoid Synthase Type I 81 367 - -
Lja4g3245 369 Pfam Polyprenyl synthetase 105 338 IPR000092 GO:0008299
Lja4g3245 369 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 1 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3245 Lja-Chr4 61139817 61141413 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3245 K13789 - gmx:100785539 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3245 4 61139817 61141413 Lja4g3245 4 61139817 61141413 ECH
Lja2g0414 2 3783028 3784354 Lja4g3245 4 61139817 61141413 ECH
Lja2g0414 2 3783028 3784354 Lja4g3245 4 61139817 61141413 PCT