Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0414 ATGAGTTCACTGAATTTTGGTACATGGCCAAGTCCCACTTGTTTGTTAAACCAAGGTGGAAGAAATCCCCCAACTCCCAATTCCATTTTTCACAGCCTCAGAAGGATTCCAATTCCCTCCATTACCAATGAACTGGGAAGAAAATCAATTTCTTCGTCTTCTTCTATTTCTTCTTCCCCTCTAGTCATCTCTGCAGTGGCTACTAACTTAGACATACTCACAGTCGAAGAACTCAAATCCACACCCAAGTTCAACTTCGAAGCCTACATGCTCCAAAAGGCCCACACAATCAACAAGGCATTGGACGCAGCAATTCCCCTGAAGGAGCCAGAGAAGATCCACCAAGCCATGCGATACTCCCTCCTCGCCGGCGGCAAGCGCGTCCGGCCGGTGCTATGCATCGCCGCCTGCGAGCTCGTCGGCGGGGATGAGCAAACCGCCATGCCCGCTGCCTGTGCCGTGGAGATAATCCATACCATGTCACTCATCCACGATGACCTCCCCTGCATGGACAACGACGATCTCCGGCGAGGGAGGCCCACCAACCACAAGGCCTTCGGCGAGAACTTCGCAGTCCTCGCCGGCGACGCGCTCCTCGCCTTCGCCTTCGAGCACTTAACGTGCTCGAAGGTGGCGCCGGGAAGGGTGGTTCGCGCGGTTGCTGAGCTAGCAAAATCGGTCGGAGGAGAAGGGTTAGTTGCAGGGCAAACTGTGGATATTGACTCGGAAGGTGTGTCGGATGTGGGACTAGAGAGGCTTGAATACATTCACGTGCACAAAACCGCGGTGCTGTTGGAGGCTTCGGTTGTGTTGGGAGCAATCATGGGTGGTGGTTCCGACGAGGAAGTTGAAAGGTTGAGGAAGTTTGCGAGGTGCATTGGGTTGTTGTTTCAGGTGGTGGATGACATTCTTGATGTGACCAAATCGTCTGAGGAACTGGGGAAGACAGCAGGGAAGGACTTGGTGGCTGATAAGGTCACATACCCTAAACTTTTAGGGATTGAAAAATCGAAGGAATTTGCTGCAAAATTGAACAAGGAAGCACACAAGCAACTCGCAGGGTTTGATCCGGAAAAGGCTGCTCCTTTGTTAGCTTTAGCTAATTACATTGCTCACAGGCAAAACTAG 1128 0.5195 MSSLNFGTWPSPTCLLNQGGRNPPTPNSIFHSLRRIPIPSITNELGRKSISSSSSISSSPLVISAVATNLDILTVEELKSTPKFNFEAYMLQKAHTINKALDAAIPLKEPEKIHQAMRYSLLAGGKRVRPVLCIAACELVGGDEQTAMPAACAVEIIHTMSLIHDDLPCMDNDDLRRGRPTNHKAFGENFAVLAGDALLAFAFEHLTCSKVAPGRVVRAVAELAKSVGGEGLVAGQTVDIDSEGVSDVGLERLEYIHVHKTAVLLEASVVLGAIMGGGSDEEVERLRKFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVADKVTYPKLLGIEKSKEFAAKLNKEAHKQLAGFDPEKAAPLLALANYIAHRQN* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0414 375 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC 42 375 - -
Lja2g0414 375 Pfam Polyprenyl synthetase 111 345 IPR000092 GO:0008299
Lja2g0414 375 ProSitePatterns Polyprenyl synthases signature 2. 293 305 IPR033749 -
Lja2g0414 375 SFLD Isoprenoid Synthase Type I 88 373 - -
Lja2g0414 375 Gene3D Farnesyl Diphosphate Synthase 79 375 IPR008949 -
Lja2g0414 375 ProSitePatterns Polyprenyl synthases signature 1. 162 178 IPR033749 -
Lja2g0414 375 SFLD Polyprenyl Transferase Like 88 373 - -
Lja2g0414 375 SUPERFAMILY Terpenoid synthases 88 356 IPR008949 -
Lja2g0414 375 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 42 375 - -
Lja2g0414 375 CDD Trans_IPPS_HT 109 373 IPR000092 GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0414 Lja-Chr2 3783028 3784354 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0414 K13789 - gmx:100778289 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0414 2 3783028 3784354 Lja2g0414 2 3783028 3784354 ECH
Lja2g0414 2 3783028 3784354 Lja4g3245 4 61139817 61141413 ECH
Lja2g0414 2 3783028 3784354 Lja4g3245 4 61139817 61141413 PCT