Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3233 ATGGAGCAGGGTGGTAATGAAGACAAGGACACGACGATCAACAAATACGCCTTAGCTTGTGTCATAGTCGCTTCAATGGTATCCATCATATCTGGTTATGATACTGGTGTCATGAGTGGAGCTCTGCTATTCATAAAGGAAGATATCGGAATTAGCGACACCCAACAAGAAGTTCTAGCAGGAATCTTAAACATATGTGCTCTGGTGGGATGCTTAGCTGCTGGAAAAACCTCTGATTACATTGGTCGTCGCTACACAATCTTCTTGGCCTCTATCCTCTTCTTGGTTGGTGCAGTTTTCATGGGTTATGGCCCAAACTTTGCAATCTTAATGTTTGGAAGATGTGTGTGTGGTCTGGGTGTGGGATTTGCTCTCACAACAGCACCAGTTTACTCTGCAGAGCTTTCCTCTGCATCAACTCGAGGTTTTCTAACTTCCTTACCTGAAGTTTGCATTGGTCTTGGGATATTTATCGGATATATCTCAAACTACTTCCTCGGGAAACTAGCTTTAACACTTGGATGGAGACTGATGCTTGGCCTTGCAGCAATTCCTTCACTTGGCTTGGCTTTGGGAATTCTAACAATGCCAGAGTCTCCAAGGTGGTTGGTGATGCAGGGTCGTCTAGGATGTGCCAAGAAGGTACTTTTGGAAGTTTCTAATACCACAGAAGAGGCTGAACTTCGCTTCAGAGATATAATAGTTTCTGCTGGGTTTGATGAGAAGTGCAATGATGAGTTCGTGAAGCAGCCTCAAAAGTCCCACCATGGCGAAGGGGTTTGGAAAGAGTTGTTCCTGAGGCCCACACCACCTGTTCGTCGGATGTTGATTGCTGCAGTTGGAATTCACTTCTTTGAGCATGCAACTGGAATTGAAGCTGTGATGTTGTATGGTCCGAGAATATTTAAGAAAGCTGGTGTTACAACCAAGGACAGACTCTTACTTGCAACAATTGGAACAGGCCTTACAAAGATCACTTTCTTGACAATATCCACATTTTTGCTTGACAGAGTTGGTAGAAGACGCCTCTTACAAATAAGCGTTGCAGGAATGATTTTCGGGCTTACAATTTTGGGCTTCAGCTTGACCATGGTGGAATACTCTAGTGAAAAGCTTGTGTGGGCCTTGAGCCTTAGCATTGTGGCAACATACACTTATGTTGCTTTCTTTAATGTTGGGCTTGCACCTGTGACATGGGTGTATAGTTCAGAGATATTCCCTTTGAGGTTGAGAGCACAAGGGAATAGCATAGGAGTTGCGGTCAACAGAGGCATGAATGCTGCTATCTCCATGAGTTTTATTTCCATCTACAAAGCAATCACTATAGGTGGGGCCTTCTTCTTGTTTGCTGGCATGTCTGTGGTAGCTTGGGTGTTCTTTTACTTCTGCCTTCCTGAAACCAAAGGCAAGGCCTTAGAAGAGATGGAAATGGTCTTCTCCAAAAAATCCGATGATAAAACTGTAGCGACATGA 1473 0.4413 MEQGGNEDKDTTINKYALACVIVASMVSIISGYDTGVMSGALLFIKEDIGISDTQQEVLAGILNICALVGCLAAGKTSDYIGRRYTIFLASILFLVGAVFMGYGPNFAILMFGRCVCGLGVGFALTTAPVYSAELSSASTRGFLTSLPEVCIGLGIFIGYISNYFLGKLALTLGWRLMLGLAAIPSLGLALGILTMPESPRWLVMQGRLGCAKKVLLEVSNTTEEAELRFRDIIVSAGFDEKCNDEFVKQPQKSHHGEGVWKELFLRPTPPVRRMLIAAVGIHFFEHATGIEAVMLYGPRIFKKAGVTTKDRLLLATIGTGLTKITFLTISTFLLDRVGRRRLLQISVAGMIFGLTILGFSLTMVEYSSEKLVWALSLSIVATYTYVAFFNVGLAPVTWVYSSEIFPLRLRAQGNSIGVAVNRGMNAAISMSFISIYKAITIGGAFFLFAGMSVVAWVFFYFCLPETKGKALEEMEMVFSKKSDDKTVAT* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3233 490 Pfam Sugar (and other) transporter 21 479 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja4g3233 490 ProSitePatterns Sugar transport proteins signature 1. 74 91 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja4g3233 490 Gene3D MFS general substrate transporter like domains 9 484 IPR036259 -
Lja4g3233 490 ProSitePatterns Sugar transport proteins signature 2. 116 141 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja4g3233 490 ProSiteProfiles Major facilitator superfamily (MFS) profile. 20 468 IPR020846 GO:0022857
Lja4g3233 490 PRINTS Sugar transporter signature 28 38 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja4g3233 490 PRINTS Sugar transporter signature 111 130 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja4g3233 490 PRINTS Sugar transporter signature 286 296 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja4g3233 490 PRINTS Sugar transporter signature 380 401 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja4g3233 490 PRINTS Sugar transporter signature 403 415 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja4g3233 490 SUPERFAMILY MFS general substrate transporter 10 476 IPR036259 -
Lja4g3233 490 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 9 487 IPR045262 GO:0015144
Lja4g3233 490 PANTHER POLYOL TRANSPORTER 3-RELATED 9 487 - -
Lja4g3233 490 TIGRFAM SP: MFS transporter, sugar porter (SP) family 16 475 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3233 Lja-Chr4 60985391 60987879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3233 8 485 Organic Solute Cotransporters AT4G36670 65.481 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3233 - - gmx:100806930 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0442 2 4049712 4062166 Lja4g3233 4 60985391 60987879 ECH
Lja4g3233 4 60985391 60987879 Lja4g3233 4 60985391 60987879 ECH