Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0442 ATGGAACTAGGTGGTGAAGAGAACATGTTCAACAAATATGCATTTGCATGTGCTGTGGTCGCTTCTATGATATCCATCATATTTGGTTACGATACGGGTGTGATGAGTGGAGCCATGATATTCATAAAGGATGATCTCAAAATCAGCGACACTCAACAAGAAGTTCTCGCAGGAATCTTAAACCTATGTGCACTTGTGGGATCCTTAACTGCTGGAAGAATCTCAGATTACATTGGTCGACGCTACACAATCGTCATAGCCTCTCTCCTTTTCATGGTTGGTTCGGTTCTCATGGGCTACGGTCCAAACTACGTAATTTTAATGGTTGGAAGATGTGTTGCTGGTGTTGGCGTCGGCTTTGCTCTTCTAATAGCACCAATATATTCCGCAGAAATATCCTCTGCAAAATCAAGAGGCTTTCTCACCTCCTTACCAGAGCTTTGCATTGGAATTGGAATTTTACTTGGTTACATTGCAAACTACTTCTTGGGAAAATTGACATTGAAGCTTGGATGGAGATTGATGCTTGGTCTTGCTGCAGTTCCTTCACTTGCTTTGGCTCTGGGAATTTTGGCATTGCCAGAGTCTCCAAGGTGGTTGGTGATGCAAGGGAAATTGGGAAAAGCAAAGAAAGTGTTGTTGCAAGTTTCAAATACAGAACAAGAGGCTGAACTTCGCTTCAAGGATATTAAAATCGCTGCTGGGATTAACGAGAGTTCCACAGAGGAAATGGTTATGAAGCTCGCTGGAAAAAACCATGGTGAAGGTGTTTGGAAAGACTTGTTTCTAAGGCCTTCTAGTTCTGTTCGTTGGATCCTTATTGCAGCGGTTGGGATTCATTTTTTCGAGCACGCAACTGGAATTGAAGCTGTGATGTTATATAGCCCAAGAATCTTTAAAAAAGCTGGTGTTACCACCAAGGACAAGCTCTTGCTCACAACAATTGGAGTAGGCGTTACCAAAATCACTTTTCTGATCATAGCATCATTTTTGCTTGACAAAGTTGGAAGGAGGCGCCTCTTACTTGTGAGCACAGGAGGAATGGTATGTAGCCTTACAGTGTTGGGATTTAGCTTGACCATGGTGGATAGTTCTCAGGAAAAGCTATATTGGGCGTTGGCACTCAGCATAATGGCGACTTACATTTTTGTTGCGTTTTTTAACATTGGGCTTGGGCCTGTCACGTGGGTTTATAGTTCAGAGATTTTTCCTTTGAAGCTGAGAGCACAAGGGGCGAGTATAGGAGTTGCGGTGAACAGGGTCATGAATGCTATTGTTTCTATGAGTTTTATTTCAATCTACAAAGCAATCACCATAGGAGGGAGTTTTTTCATGTTTGCTGGTATTTCTATATTAGCTTGGTTATTCTTTTACTTCTTCCTACCTGAAACCAAGGGTAAGGCCTTGGAAGAGATGGAGATGGTTTTCAGCAAAAACTATAATAAAAATGTAACCACAGAAACTGATCTGAGACAGAATGCATAG 1485 0.4189 MELGGEENMFNKYAFACAVVASMISIIFGYDTGVMSGAMIFIKDDLKISDTQQEVLAGILNLCALVGSLTAGRISDYIGRRYTIVIASLLFMVGSVLMGYGPNYVILMVGRCVAGVGVGFALLIAPIYSAEISSAKSRGFLTSLPELCIGIGILLGYIANYFLGKLTLKLGWRLMLGLAAVPSLALALGILALPESPRWLVMQGKLGKAKKVLLQVSNTEQEAELRFKDIKIAAGINESSTEEMVMKLAGKNHGEGVWKDLFLRPSSSVRWILIAAVGIHFFEHATGIEAVMLYSPRIFKKAGVTTKDKLLLTTIGVGVTKITFLIIASFLLDKVGRRRLLLVSTGGMVCSLTVLGFSLTMVDSSQEKLYWALALSIMATYIFVAFFNIGLGPVTWVYSSEIFPLKLRAQGASIGVAVNRVMNAIVSMSFISIYKAITIGGSFFMFAGISILAWLFFYFFLPETKGKALEEMEMVFSKNYNKNVTTETDLRQNA* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0442 494 ProSiteProfiles Major facilitator superfamily (MFS) profile. 17 465 IPR020846 GO:0022857
Lja2g0442 494 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 7 486 IPR045262 GO:0015144
Lja2g0442 494 Pfam Sugar (and other) transporter 17 476 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja2g0442 494 ProSitePatterns Sugar transport proteins signature 1. 328 345 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja2g0442 494 PANTHER POLYOL TRANSPORTER 3-RELATED 7 486 - -
Lja2g0442 494 ProSitePatterns Sugar transport proteins signature 1. 71 88 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja2g0442 494 ProSitePatterns Sugar transport proteins signature 2. 113 138 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja2g0442 494 TIGRFAM SP: MFS transporter, sugar porter (SP) family 11 472 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja2g0442 494 Gene3D MFS general substrate transporter like domains 6 480 IPR036259 -
Lja2g0442 494 PRINTS Sugar transporter signature 25 35 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja2g0442 494 PRINTS Sugar transporter signature 400 412 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja2g0442 494 PRINTS Sugar transporter signature 283 293 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja2g0442 494 PRINTS Sugar transporter signature 377 398 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja2g0442 494 PRINTS Sugar transporter signature 108 127 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja2g0442 494 SUPERFAMILY MFS general substrate transporter 8 473 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0442 Lja-Chr2 4049712 4062166 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0442 2 482 Organic Solute Cotransporters AT4G36670 67.220 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0442 - - gmx:102661233 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0442 2 4049712 4062166 Lja4g3233 4 60985391 60987879 ECH
Lja2g0442 2 4049712 4062166 Lja2g0442 2 4049712 4062166 ECH