Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3220 ATGGGATCATCATGGACACCAAGGCAGAACAAAATGTTTGAGCAGGCACTGGCTTTATATGATAGGGAAACCCCTGACAGGTGGCAGAATGTTGCAAACATTGTGGGAAGATCAGTTGAGGAGGTGAAAAGGCACTATGAGATCCTCAAAGAAGATGTGCAACGCATTGAGCATGGACAAGTCCCATTTCCTCGTTACAGAACAAACTCCAACTCCTAA 219 0.4521 MGSSWTPRQNKMFEQALALYDRETPDRWQNVANIVGRSVEEVKRHYEILKEDVQRIEHGQVPFPRYRTNSNS* 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3220 72 ProSiteProfiles SANT domain profile. 1 54 IPR017884 -
Lja4g3220 72 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 72 - -
Lja4g3220 72 CDD SANT 4 50 IPR001005 -
Lja4g3220 72 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 72 IPR044636 GO:0003700
Lja4g3220 72 SMART sant 1 52 IPR001005 -
Lja4g3220 72 Gene3D - 1 63 - -
Lja4g3220 72 SUPERFAMILY Homeodomain-like 3 58 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3220 Lja-Chr4 60811261 60812560 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3220 - - lja:Lj4g3v0973380.1 152.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0466 2 4255610 4256675 Lja4g3220 4 60811261 60812560 ECH
Lja4g3220 4 60811261 60812560 Lja4g3220 4 60811261 60812560 ECH