Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3171 ATGGGGTTCCTCAGTTTCCCAAAGTTACATCTACTTCTCATCTTTACAGCTTCCATAACCTCATTCAATGCAGAATCAAAGACACATTGGGAAGACACAGAGGTTCTGAAGCAACTAAAGAACAGCATCGACCCTTCTTCTCTGAACCCAGGTTCATGTCTCAGCTCATGGGACTTCACTCTTGACCCATGCGACAACCTCTTCAGCGAAAAATTCACCTGCGGGTTCAGGTGCGACGCGGTCGAGTCAGGAACGAGTCGACTCACCGAACTCAGCCTCGACCAGGCGGGTTACTCCGGATCACTCGCCGCCACCACCTGGAACAACCTCCCCTACCTCGACACCGTCGACATCTCAAACAACAACTTCTCAGGCCAAATCCCCGAGTCACTCTCCAACCTGACTCGCCTCCGCCGACTCGGTCTGTCGAGAAACTCGTTCACCGGCGAGATACCCTCTTCAATCGGTTCACTCTCCAACCTCGAAGAGCTCTACCTCGATGGCAACAATCTTCAAGGAACAATCCCAGGTAGCTTCAATGGCCTCAAAAGCTTGAACAGGCTCGAACTTCAGTTCAACAAACTCTCCGGCGAGCTTCCGAATCTGGGTTCTCTGAAGAATCTCAATTACATGGACCTCAGCGTCAACGCCATCACCGGAGCTTTGCCGGCGACACTGCCGGAGTCTCTGGTTCAAATCTCAATGAGAAACAACAGTTTGAAGGGCGAGTTAGCTTCCGAGAGTTTCAGAAACTTGAGGTATTTGCAGGTAGTGGATTTGAGCTACAACGAGTTCAGAGGCTCTGTTCCTTTTGCTCTGTTTCAGCTTCCATCGTTGCAGCAGCTATCACTCTCTCACAACCAGTTCTCTTTCCTGCAAGAACCTTCTTCCGCTTTGGACTCGCTAAGCTCTGGGCTAGTAGAAATCGATCTGAGCAACAATGAGCTTGAGGGTTTTCTGCCTCTGTTCATGGCAGTGATGCCAAAGCTTGCATCATTATCATTGGAGAACAACAGATTCAGTGGAATGATTCCGACCCAGTACGCTTTGAAAGCAGTTTTTCCAGAATCTGGGGTTTCTCAGTTTGAGAGGCTTCTGTTGGGTGGGAATTTCTTGTTTGGAGGTATACCAAGTGCTCTAATGGCGCTTGAACCTGGTTCTGCAAATGTGGGTCTTGCTGGGAATTGCTTGTATAGGTGCCCTCGTGTTTTGTTTTTCTGTCAAGGTGAGGATCAAAAATCTTTTGATGAATGTAAGAGATTCATCCCCTAA 1272 0.4882 MGFLSFPKLHLLLIFTASITSFNAESKTHWEDTEVLKQLKNSIDPSSLNPGSCLSSWDFTLDPCDNLFSEKFTCGFRCDAVESGTSRLTELSLDQAGYSGSLAATTWNNLPYLDTVDISNNNFSGQIPESLSNLTRLRRLGLSRNSFTGEIPSSIGSLSNLEELYLDGNNLQGTIPGSFNGLKSLNRLELQFNKLSGELPNLGSLKNLNYMDLSVNAITGALPATLPESLVQISMRNNSLKGELASESFRNLRYLQVVDLSYNEFRGSVPFALFQLPSLQQLSLSHNQFSFLQEPSSALDSLSSGLVEIDLSNNELEGFLPLFMAVMPKLASLSLENNRFSGMIPTQYALKAVFPESGVSQFERLLLGGNFLFGGIPSALMALEPGSANVGLAGNCLYRCPRVLFFCQGEDQKSFDECKRFIP* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3171 423 Pfam Leucine rich repeat 230 289 IPR001611 GO:0005515
Lja4g3171 423 Pfam Leucine rich repeat 137 195 IPR001611 GO:0005515
Lja4g3171 423 Gene3D Ribonuclease Inhibitor 201 409 IPR032675 -
Lja4g3171 423 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 421 - -
Lja4g3171 423 SUPERFAMILY L domain-like 83 349 - -
Lja4g3171 423 SMART LRR_typ_2 158 181 IPR003591 -
Lja4g3171 423 SMART LRR_typ_2 134 157 IPR003591 -
Lja4g3171 423 SMART LRR_typ_2 182 205 IPR003591 -
Lja4g3171 423 SMART LRR_typ_2 327 350 IPR003591 -
Lja4g3171 423 SMART LRR_typ_2 276 301 IPR003591 -
Lja4g3171 423 Gene3D Ribonuclease Inhibitor 31 200 IPR032675 -
Lja4g3171 423 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3171 Lja-Chr4 59954910 59956408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3171 74 380 Receptor kinase-like Gene Family AT3G28890 33.129 2.25e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3171 - - adu:107478747 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3171 4 59954910 59956408 Lja4g3171 4 59954910 59956408 ECH
Lja2g0518 2 4663346 4665090 Lja4g3171 4 59954910 59956408 ECH
Lja2g0518 2 4663346 4665090 Lja4g3171 4 59954910 59956408 PCT