Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0518 ATGGGGTCTTTGTTTTTCTCTCTGTTCATGATCATCTCAGCTTCAGGATTCCTATTCAGAGCAGAATCAAAGACATTTTGGGGAGATGCAGAGGTTCTGAAGAAACTAAAACAGAGCATGGACCCTGCTTCAGTCACTCCAGGCTCATGCGTGAGCTCCTGGGACTTCTCCATCGACCCATGCGACAACGTTTCAGGTGAGAAGTTCACCTGCGGGTTCAGGTGCGACGTCGTCGTTTCAGGGCTGAGCCGAGTCACCGAACTCAGTCTCGACCAAGCGGGTTACGCCGCCTCACTCTTCTCCTTCACCTGGAACCTCCCTTATCTAGAAACCCTCGATGTCTCCAACAACTACTTCTCCGGCCACATCCCCGATTCCTTCTCGAACCTGACTCGCCTCCGCCGACTCGGTCTCTCAGCGAACTCGTTCTCCGGCGAGATACCCTCTTCAATTGGTTCCCTCTCGAGCCTCGAAGAGCTCTACCTCGATAACAACCACCTCGAAGGAGCAATACCCAGAAGCTTCAACGGGCTTGTGAGCTTGAAAACACTCCAACTTCAATCAAACAAGCTCGTGGGTCAGTTCCCAGATTTGAGCTCCCTGAGAAACCTTAACTACCTTGACCTCAGTGCAAATTCCCTCGCCGGAGCATTACCGGCGTCGCTGCCGGTTTCCTTGATTCAGATTACAATCAGGAACAACCAGTTAACCGGAGTCTTAGCCTCTGAAAGCTTCAAGGATTTGGCATACTTGCAGGTAGTGGATTTGAGTGGTAACAGATTCACTGGCTCTGTTCCCTCTGTTCTGTTTCAGCTTCCATCGCTGCAACAATTGACACTCTCCTTCAACCAATTCTCCTCCATAGAAACCCCTTATCCAGGTTCCTCATTGCAAAGCGGGCTCATTGCGGTTGATCTGAGCAACAACCAGCTTCAGGGGCTTCTACCATCGTTCATGGCGCTGATGCCAAGGCTTTCATCTTTGTCATTGGAGAACAACCGGTTCACCGGTCTAATACCGACCCTGTATGCAGTGAAGACGGTTTTTCCTCAAACCGGGTTCGCTTCGTTCCAGAGGCTTCTGTTGAGAGGGAATTACTTGCTAGGAGGGATACCTCGGCTTCTGCTGACTCTGAAACCTGATTCTGCTAATTTGAGCCTTGTCGATAACTGCTTGTTTAGGTGTCCTCATGTTTTCTTTTTCTGTCAAGGTGGTCAGCAGAAATCATCAGCAGAATGTAGTGGATTTAGCCAACTCACCCATTAG 1266 0.5 MGSLFFSLFMIISASGFLFRAESKTFWGDAEVLKKLKQSMDPASVTPGSCVSSWDFSIDPCDNVSGEKFTCGFRCDVVVSGLSRVTELSLDQAGYAASLFSFTWNLPYLETLDVSNNYFSGHIPDSFSNLTRLRRLGLSANSFSGEIPSSIGSLSSLEELYLDNNHLEGAIPRSFNGLVSLKTLQLQSNKLVGQFPDLSSLRNLNYLDLSANSLAGALPASLPVSLIQITIRNNQLTGVLASESFKDLAYLQVVDLSGNRFTGSVPSVLFQLPSLQQLTLSFNQFSSIETPYPGSSLQSGLIAVDLSNNQLQGLLPSFMALMPRLSSLSLENNRFTGLIPTLYAVKTVFPQTGFASFQRLLLRGNYLLGGIPRLLLTLKPDSANLSLVDNCLFRCPHVFFFCQGGQQKSSAECSGFSQLTH* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0518 421 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 6 418 - -
Lja2g0518 421 Gene3D Ribonuclease Inhibitor 28 195 IPR032675 -
Lja2g0518 421 SMART LRR_typ_2 272 298 IPR003591 -
Lja2g0518 421 SMART LRR_typ_2 106 129 IPR003591 -
Lja2g0518 421 SMART LRR_typ_2 154 177 IPR003591 -
Lja2g0518 421 SMART LRR_typ_2 322 345 IPR003591 -
Lja2g0518 421 SMART LRR_typ_2 201 225 IPR003591 -
Lja2g0518 421 Pfam Leucine rich repeat 133 191 IPR001611 GO:0005515
Lja2g0518 421 Pfam Leucine rich repeat 229 285 IPR001611 GO:0005515
Lja2g0518 421 Gene3D Ribonuclease Inhibitor 196 411 IPR032675 -
Lja2g0518 421 Pfam Leucine Rich Repeat 109 130 IPR001611 GO:0005515
Lja2g0518 421 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 6 418 - -
Lja2g0518 421 SUPERFAMILY L domain-like 79 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0518 Lja-Chr2 4663346 4665090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0518 79 416 Receptor kinase-like Gene Family AT3G28890 28.316 3.42e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0518 - - gmx:100792484 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0518 2 4663346 4665090 Lja2g0518 2 4663346 4665090 ECH
Lja2g0518 2 4663346 4665090 Lja4g3171 4 59954910 59956408 ECH
Lja2g0518 2 4663346 4665090 Lja4g3171 4 59954910 59956408 PCT