Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3119 ATGGTGCTCGAGGCGACGATGATCTGTATTGACAATTCTGAATGGATGCGTAATGGGGACTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCTGTCAATCTTATTTGTGGTGCTAAAACCCAGTCTAATCCTGAGAATACGGTTGGAGTTCTCACGATGGCGGGGAAGGGTGTTCGTGTTTTGGTCACCCCTACCAGTGATTTGGGAAAGATCTTAGCTTGTATGCATGGACTAGAAATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACAGTTAGCTCTTAAGCATCGGCAGAATAAGAAACAGCAGCAAAGGATTATTGTCTTTACTGGGAGTCCTATCAAGCACGAGAAGAAAATGTTGGAGATGATTGGGCGAAAGTTGAAAAAGAATAGCGTTGCACTTGACATTGTCAATTTTGGTGAAGAAGACGAGGGAAAGACAGAGAAGCTGGATGCACTCCTTGCAGCCGTTAATAATAATGATACCAGCCGCATGGCTCATGTTCCACCTGGTCCAAATGCTCTATCTGATGTACTTATAAGTACACCAATTTTTACTGGTGATGGAGAGGGTGGAAGTGGTTTTGCAGCAGCTGCTGCTGCAGCAGCAGCAGCAGGTGGTGTATCTGGATATGACTTTGGCGTGGATCCGAACTTGGACCCGGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGGGCCCGACAGGAAGCAGCTGCAAAGAAGGCTGCAGAGGATGCTTCCAAGGAGAATGGTGGTGAGCAGCAAGCCAGCTCGCAGGATGCAGCCATGATTGAGCGTGCTAGTGAAGAAACTTCAGAAGCTGCGACTAAGACAAATGATATGATGGACGATGAGAATGCTCTACTACAGCAGGCCCTTGCTATGTCAATGGATGATCCTGTGATTAACAAAGATATGAGAGATACAGATATGTCTGAAGCAGCTGCAGATGATCCTGAGTTAGCTTTAGCTCTCCAATTGTCAGTAGCAGATGGCAGTGAGGACTCAGGAAGCCAGTCAGACATGAGTAAATTGTTGGCAGATCAGTCGTTTGTATCTTCTATCCTTGCATCGCTTCCCGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTACTGGCCTCCATGCAAAATCAGTCTGAACCCCAACAGAAGAATGAAGACAAGCCACCAAATGAGGAGGAGAAGAAATAA 1218 0.4672 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFTGSPIKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKTEKLDALLAAVNNNDTSRMAHVPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDASKENGGEQQASSQDAAMIERASEETSEAATKTNDMMDDENALLQQALAMSMDDPVINKDMRDTDMSEAAADDPELALALQLSVADGSEDSGSQSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEPQQKNEDKPPNEEEKK* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3119 405 MobiDBLite consensus disorder prediction 274 288 - -
Lja4g3119 405 MobiDBLite consensus disorder prediction 243 290 - -
Lja4g3119 405 MobiDBLite consensus disorder prediction 365 405 - -
Lja4g3119 405 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Lja4g3119 405 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Lja4g3119 405 MobiDBLite consensus disorder prediction 379 393 - -
Lja4g3119 405 SMART VWA_4 2 175 IPR002035 -
Lja4g3119 405 Pfam Ubiquitin interaction motif 325 338 IPR003903 -
Lja4g3119 405 Pfam Ubiquitin interaction motif 225 238 IPR003903 -
Lja4g3119 405 Pfam Ubiquitin interaction motif 292 307 IPR003903 -
Lja4g3119 405 SMART uim 324 343 IPR003903 -
Lja4g3119 405 SMART uim 223 242 IPR003903 -
Lja4g3119 405 SMART uim 292 311 IPR003903 -
Lja4g3119 405 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Lja4g3119 405 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 405 - -
Lja4g3119 405 Gene3D - 221 306 - -
Lja4g3119 405 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 405 - -
Lja4g3119 405 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 223 242 IPR003903 -
Lja4g3119 405 SUPERFAMILY vWA-like 4 173 IPR036465 -
Lja4g3119 405 Coils Coil 233 253 - -
Lja4g3119 405 MobiDBLite consensus disorder prediction 258 273 - -
Lja4g3119 405 CDD VWA_26S_proteasome_subunit 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3119 Lja-Chr4 58953803 58961506 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3119 K03029 - gmx:100814594 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3119 4 58953803 58961506 Lja4g3119 4 58953803 58961506 ECH
Lja2g0563 2 5091392 5096610 Lja4g3119 4 58953803 58961506 PCT