Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0563 ATGGTGCTCGAGGCGACAATGATCTGTATTGACAATTCTGAATGGATGCGTAACGGAGATTACAATCCCTCTCGATTTCAAGCTCAAGCAGACGCTGTCAATCTCATTTGCGGTGCCAAAACACAGTCTAATCCGGAAAATACAGTGGGAGTTCTCACAATGGCAGGGAAAGGTGTTCGTGTTTTGGTCACCCCTACCAGCGATCTGGGCAAGATCTTAGCCTGCATGCATGGACTAGAGATTGGTGGTGAGATGAACCTTGCTGCCGGCATTCAAGTTGCGCAGTTGGCTCTTAAGCATCGGCAAAATAAAAAGCAGCAGCAACGGATTGTTGTTTTTGCTGGAAGTCCTGTTAAGCATGAAAAGAAAATGCTGGAGATGATAGGGAGGAAGCTGAAAAAGAATAGTGTAGCACTTGATATTATTAATTTTGGTGAAGAAGATGAGGGGAAGACGGAGAAGCTGGAAGCTCTTCTTGCGGCTGTTAACAATAATGATAGCAGCCACATTGTTTCTGTTCCACCTGGTCCAAATGCTCTTTCTGATGTACTGATAAGTACACCTATATTTACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCCGCTGCTGCTGCCGCAGCTGCAGCTGGTGGTGTATCTGGATATGAGTTTGGTGTTGATCCAAACTTGGATCCTGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGGGCCAGGCAGGAAGCAGCAGCCAAGAAGGCTGCAGAGGAGGCGGCCAACCAAGAGAAAGGAGGTGAAACCAGCTCCCAAGATGCAACAATGACTGAACGTGCCAGTGCAGCCACTTCTGAAGCTGAGAATAAAACAATTGATTTAATGGATGATGAGAATGCCCTACTCCAGCAGGCACTTGCAATGTCAATGGATGACCCTGTGAGTAGCCATGATGTAAAAGATACGGATATGTCAGAAGCACCTGCAGATGACCCTGATTTGGCACTAGCTCTCCAATTGTCAGTAGCAGATGGCACAAAGGATTCAGGAAGCCAGTCGTCAGACATGAGTAAATTGTTGGCAGATCAATCTTTTGTATCTTCTATCCTTGCATCGCTTCCAGGGGTTGACCCAAATGACCCTTCTGTCAAAGATTTACTGGCCTCCATGCAAAATCAATCTGAGCCTGAGAAGAAGAATGACGACAAGCCATCAGATGAGGAGAAGAAATAA 1212 0.462 MVLEATMICIDNSEWMRNGDYNPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIVVFAGSPVKHEKKMLEMIGRKLKKNSVALDIINFGEEDEGKTEKLEALLAAVNNNDSSHIVSVPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGYEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEEAANQEKGGETSSQDATMTERASAATSEAENKTIDLMDDENALLQQALAMSMDDPVSSHDVKDTDMSEAPADDPDLALALQLSVADGTKDSGSQSSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEPEKKNDDKPSDEEKK* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0563 403 MobiDBLite consensus disorder prediction 388 403 - -
Lja2g0563 403 SMART uim 322 341 IPR003903 -
Lja2g0563 403 SMART uim 222 241 IPR003903 -
Lja2g0563 403 SMART uim 290 309 IPR003903 -
Lja2g0563 403 MobiDBLite consensus disorder prediction 303 322 - -
Lja2g0563 403 MobiDBLite consensus disorder prediction 242 285 - -
Lja2g0563 403 Pfam Ubiquitin interaction motif 290 305 IPR003903 -
Lja2g0563 403 Pfam Ubiquitin interaction motif 323 336 IPR003903 -
Lja2g0563 403 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Lja2g0563 403 Coils Coil 232 257 - -
Lja2g0563 403 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Lja2g0563 403 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 402 - -
Lja2g0563 403 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Lja2g0563 403 SUPERFAMILY vWA-like 4 169 IPR036465 -
Lja2g0563 403 Gene3D - 220 306 - -
Lja2g0563 403 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 402 - -
Lja2g0563 403 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 290 309 IPR003903 -
Lja2g0563 403 MobiDBLite consensus disorder prediction 364 403 - -
Lja2g0563 403 MobiDBLite consensus disorder prediction 257 281 - -
Lja2g0563 403 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Lja2g0563 403 CDD VWA_26S_proteasome_subunit 1 188 - -
Lja2g0563 403 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Lja2g0563 403 SMART VWA_4 2 175 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0563 Lja-Chr2 5091392 5096610 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0563 K03029 - gmx:100814594 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0563 2 5091392 5096610 Lja2g0563 2 5091392 5096610 ECH
Lja2g0563 2 5091392 5096610 Lja4g3119 4 58953803 58961506 PCT