Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2643 ATGGCCGTTCAGGCTCAATATCCATCCAATGTCCTCCTTCTAAACAACAGAAACGGGCAAGAAGCACATCATGAGTACTCATTACAACCACAACCTGGAGGACTAATTGATCAATCTCACCACATGCTATACAACAACAATAACAATGGTACTAATTCTCGCAAGAGAGGCAGAGAAGTCACAGGAATTGGCCATACAACAACATCAACAACCCCAAGTAATGGTATCATGAACCAATTCTCTTTGCAATCTCAGCCTCCACAACTTATAAACCTCTCTCAACTCCATAATCATCATCAAAATGGGGTTTCAACTGGGTTATGCTTATCCTTTCATGACCATCAAAATCAACAACAACAAAGACTTCATCAAAATCAACAACAAAATGGGTGTCACTCCTCTGCATTCCTATCTCTATTATCTGAAGGTTTTGCTTCACAAATCAAACAACAGAGGGATGAAATAGACCAATTGCTTCAAGCACAGGGAGAGCAACTGCGGCGGACATTGGCGGAGAAGAGGCAGAGGCATTACCAAGCGTTGCTACAAGCGGCGGAGGAGACGGTGGTGCGGCGGCTGAGGGAGAAGGAAGCCGAGGTGGAGAAAGCCACGCGCAGGAACGCGGAGCTACAAGCACGCGCCGCGCAGCTGAGCGTGGAGGCGCAGGTGTGGCAGGCCAAGGCCAGGGCGCAAGAGATCACGGCGGCGTCGCTCCAGGCACAGCTTCAGCAGACAATAATGTGCCACGGCGGTGGCGACGACAACGGCGGCGGAGGAGGTGGAGGCGGTGTCTCGTGCGCTGTGGAGGGCCAGGCGGAGGATTGCGAGTCGGCGCACGTGGACCCGGTCAGAGTGGCGGCGGCGCGTCCGAAATGCAGAGGGTGTGAGCGGCGCGTGGCATCGGTGGTGGTTCTTCCTTGTCGGCACATGTGCATTTGTGCAGAATGCGATGCGCATTTCAGAGCATGCCCTGTTTGCCTCACCCTCAAGAATTCAACAGTTGAGGTCCTTCTCTCTTAG 1020 0.5245 MAVQAQYPSNVLLLNNRNGQEAHHEYSLQPQPGGLIDQSHHMLYNNNNNGTNSRKRGREVTGIGHTTTSTTPSNGIMNQFSLQSQPPQLINLSQLHNHHQNGVSTGLCLSFHDHQNQQQQRLHQNQQQNGCHSSAFLSLLSEGFASQIKQQRDEIDQLLQAQGEQLRRTLAEKRQRHYQALLQAAEETVVRRLREKEAEVEKATRRNAELQARAAQLSVEAQVWQAKARAQEITAASLQAQLQQTIMCHGGGDDNGGGGGGGGVSCAVEGQAEDCESAHVDPVRVAAARPKCRGCERRVASVVVLPCRHMCICAECDAHFRACPVCLTLKNSTVEVLLS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2643 339 Pfam Zinc finger, C3HC4 type (RING finger) 291 327 - -
Lja4g2643 339 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 338 - -
Lja4g2643 339 Coils Coil 186 227 - -
Lja4g2643 339 ProSiteProfiles Zinc finger RING-type profile. 292 326 IPR001841 -
Lja4g2643 339 PIRSF SBP1_RNase_bind 1 339 IPR017066 -
Lja4g2643 339 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 338 IPR017066 -
Lja4g2643 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 339 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2643 Lja-Chr4 35558393 35560211 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2643 K19042 - gmx:100788122 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0164 2 1345202 1347223 Lja4g2643 4 35558393 35560211 PCT