Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0164 ATGATGGCTGTTCATGCTCAATACCCATCCAATGTACTCCTTCTAAACAGCAAGAAGGGGCAAGAAGGACATGATTGTTCATTGCAACCACAACCAGGAGGATTCATTGAACAATCCCAAATGCTATTCAACAATGGAGGTACTAATCCTCTGAAGAGAGGAAGAGAAGCAACAACAACAACCAACATTGGCACTGGGCATAAATCATCCCCTTATAACATCAATCAATCTTCCCAATTCATAGACCTCACTCAACTCCATAATCAGCCACAACAAAATGTAGTCTCCACAGGATTACACTTATCATTTGGTGATCAGCAACAACAACAGAAACAGCAATTTCACAACCATCATCATCAACAGCAACAACAACAACACCTATCTCTGTTTTTCCAAGGCTTATCCTCACAAATCAAACAACAATCAGATGAAATCAACCAATTACTTCAAACACAGGAGGAACAATTACGGCGGGGATTAGCAGAGAAGAGGCAGAGACATTATCGCTCACTATTGATTGCGGCGGAGGAATCCGTCTCACACCGGCTGAGAGAGAAGGAAGCCGAGATGGAGAAAGCGAAACGCAGGAACGCAGAGTTAGAAGCGCGCGCAGCGCAGCTTAGCATGGAGTCGCAGCTATGGCAGGCGAAGGCGAAGGAGCAGGAAGCCACGGCGGCGTCATTGCAGGCGCAACTGCAGCGCGCTATCATGAGCGGCGGAGACGGTGGGTTATCGGAGGATGCTGAATCGGCGTATGTTGACCCGGAGCGCGTGGTGGAGGTGGGTCCTACTCGTGAATGTAAGGGTTGTTGGAAGAGAGTGGCTTCGGTGGTGGTGTTGCCGTGTCGCCATCTATGCGTCTGCACAGAATGCGACGCACAATTCCGGGCATGTCCCGTTTGCCTCACACTGAAAAATTCAAGCGTTCAAGTTTATCTATCTTAG 945 0.4825 MMAVHAQYPSNVLLLNSKKGQEGHDCSLQPQPGGFIEQSQMLFNNGGTNPLKRGREATTTTNIGTGHKSSPYNINQSSQFIDLTQLHNQPQQNVVSTGLHLSFGDQQQQQKQQFHNHHHQQQQQQHLSLFFQGLSSQIKQQSDEINQLLQTQEEQLRRGLAEKRQRHYRSLLIAAEESVSHRLREKEAEMEKAKRRNAELEARAAQLSMESQLWQAKAKEQEATAASLQAQLQRAIMSGGDGGLSEDAESAYVDPERVVEVGPTRECKGCWKRVASVVVLPCRHLCVCTECDAQFRACPVCLTLKNSSVQVYLS* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0164 314 MobiDBLite consensus disorder prediction 105 124 - -
Lja2g0164 314 MobiDBLite consensus disorder prediction 47 71 - -
Lja2g0164 314 ProSiteProfiles Zinc finger RING-type profile. 267 301 IPR001841 -
Lja2g0164 314 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 2 313 - -
Lja2g0164 314 PIRSF SBP1_RNase_bind 1 314 IPR017066 -
Lja2g0164 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 314 IPR013083 -
Lja2g0164 314 Coils Coil 176 238 - -
Lja2g0164 314 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 2 313 IPR017066 -
Lja2g0164 314 Coils Coil 131 166 - -
Lja2g0164 314 Pfam Zinc finger, C3HC4 type (RING finger) 265 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0164 Lja-Chr2 1345202 1347223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0164 267 303 Miscellaneous Gene Families AT2G21380 40.541 4.32e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0164 K19042 - gmx:100797727 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0164 2 1345202 1347223 Lja4g2643 4 35558393 35560211 PCT