Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2630 ATGTACAAAGAGCGCGGTGTTTCCGCCTCCAAATCGGAGGATCGGAAGCGAATCAACGACGTTCTCGACAAGCAGCTCGAGCGATCTTCTCCCTCCACTTCCAAGCCCATCATCAACAACGGCAAAGATAGCACCAGAGACAACGACCCTCGTTCCGCTTCCGCCTCCAAAACCTCCAATCTCTCTGAGGAATCTGAAACGGACAGTGAAGAGTCAGATGTTAGTGGTTCTGACGGAGATGACACATCTTGGATCTCTTGGTTCTGCAATCTGAGAGGAAATGAATTCTTCTGTGAGGTTGATGATGATTACATCCAAGATGACTTCAACCTATGTGGATTAAGCAGCCAAGTGCCATACTATGATTATGCTCTTGATTTAATTTTGGATGTTGAATCCTCTCATGGTGACATGTTCACAGAGGAACAGAATGAGTTAATTGAATCAGCAGCAGAGATGCTTTATGGCCTGATTCATGCTCGATATGTATTGACAAGCAAAGGAATGACTGCCATGCTGGACAAGTACAAGAATTATGATTTTGGCAGATGCCCAAGAGTTTACTGCTCTGGACAACCCTGCCTCCCTGTTGGCCAGTCAGATATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGATCTTTACTATCCTCGGTCCAAGTATCAAGACATTGATGGAGCTTATTTTGGAACAACATTTCCGCACCTCTTCCTGATGACTTATGGACAACTGAAGCCACAGAAACCATCACAGGGCTATGTTCCAAGAGTGTTTGGGTTCAAAATTCACAAGCCTTGA 810 0.4494 MYKERGVSASKSEDRKRINDVLDKQLERSSPSTSKPIINNGKDSTRDNDPRSASASKTSNLSEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMTAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQDIDGAYFGTTFPHLFLMTYGQLKPQKPSQGYVPRVFGFKIHKP* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2630 269 MobiDBLite consensus disorder prediction 1 24 - -
Lja4g2630 269 SMART CK_II_beta_2 83 265 IPR000704 GO:0005956|GO:0019887
Lja4g2630 269 Pfam Casein kinase II regulatory subunit 83 265 IPR000704 GO:0005956|GO:0019887
Lja4g2630 269 MobiDBLite consensus disorder prediction 1 79 - -
Lja4g2630 269 Gene3D - 181 254 - -
Lja4g2630 269 PANTHER CASEIN KINASE II SUBUNIT BETA 1 268 IPR000704 GO:0005956|GO:0019887
Lja4g2630 269 MobiDBLite consensus disorder prediction 25 41 - -
Lja4g2630 269 SUPERFAMILY Casein kinase II beta subunit 81 268 IPR035991 GO:0005956|GO:0019887
Lja4g2630 269 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 76 180 IPR016149 GO:0005956|GO:0019887
Lja4g2630 269 ProSitePatterns Casein kinase II regulatory subunit signature. 184 215 IPR000704 GO:0005956|GO:0019887
Lja4g2630 269 PANTHER CASEIN KINASE II SUBUNIT BETA-2 1 268 - -
Lja4g2630 269 PRINTS Casein kinase II regulatory subunit family signature 202 223 IPR000704 GO:0005956|GO:0019887
Lja4g2630 269 PRINTS Casein kinase II regulatory subunit family signature 229 246 IPR000704 GO:0005956|GO:0019887
Lja4g2630 269 PRINTS Casein kinase II regulatory subunit family signature 100 114 IPR000704 GO:0005956|GO:0019887
Lja4g2630 269 PRINTS Casein kinase II regulatory subunit family signature 180 201 IPR000704 GO:0005956|GO:0019887
Lja4g2630 269 PRINTS Casein kinase II regulatory subunit family signature 155 176 IPR000704 GO:0005956|GO:0019887
Lja4g2630 269 PRINTS Casein kinase II regulatory subunit family signature 83 99 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2630 Lja-Chr4 35000943 35004504 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2630 K03115 - gmx:100793573 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0158 2 1290929 1294202 Lja4g2630 4 35000943 35004504 PCT