Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0158 ATGTACAGAGACCGTGGCGGTGCCGTTGGATCCAAATCCGAGGTGGCGCCTCCCGTTGATCGGAAGCGAATCAACGACGTCCTCGACAAGCAGCTCGAACGATCCTCACCCTCCACTTCCCGCCCTATCAACGCCAAGGACAGGGCCTCTCTCTTGTCCTCCACCGCCCACAGGGACTCTCGCAACCCTGCTCCTCCCCCTATCTCCAAGAATTCCAACGCTTCTGATGAGGAATCTGAAACAGACAGTGAAGAGTCTGATGTTAGCGGTTCTGACGGAGAGGACACGTCTTGGATCTCGTGGTTCTGTAATTTGAGAGGAAATGAGTTCTTTTGCGAGGTTGACGATGATTACATCCAAGACGATTTCAACCTTTGTGGGTTGAGCAGTCAAGTGCCTTACTATGATTATGCACTCGATTTAATTTTGGATGTCGAATCCTCCCATGGTGACATGTTTACGGAGGAACAAAATGAGTTAATTGAATCAGCAGCGGAGATGCTGTATGGTCTGATTCATGCCCGGTACATTTTGACAAGCAAAGGAATGGCTGCCATGCTGGACAAATACAAGAACTATGATTTTGGAAGATGCCCAAGAGTTTACTGCTCTGGACAACCTTGTCTTCCAGTTGGCCAGTCAGACATTCCAAGGTCTAGTACTGTGAAAATTTATTGCCCTAGGTGTGAAGACATTTACTATCCTCGGTCCAAATATCAAGGCAACATTGATGGAGCTTATTTTGGTACTACATTTCCTCACCTGTTCCTGATGACTTATGGACAACTGAAGCCACAGAAACCATCACAGAGCTACGTTCCGAGAGTTTTTGGCTTTAAGCTTCACAAGCCATGA 855 0.4749 MYRDRGGAVGSKSEVAPPVDRKRINDVLDKQLERSSPSTSRPINAKDRASLLSSTAHRDSRNPAPPPISKNSNASDEESETDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0158 284 PRINTS Casein kinase II regulatory subunit family signature 114 128 IPR000704 GO:0005956|GO:0019887
Lja2g0158 284 PRINTS Casein kinase II regulatory subunit family signature 194 215 IPR000704 GO:0005956|GO:0019887
Lja2g0158 284 PRINTS Casein kinase II regulatory subunit family signature 169 190 IPR000704 GO:0005956|GO:0019887
Lja2g0158 284 PRINTS Casein kinase II regulatory subunit family signature 97 113 IPR000704 GO:0005956|GO:0019887
Lja2g0158 284 PRINTS Casein kinase II regulatory subunit family signature 216 237 IPR000704 GO:0005956|GO:0019887
Lja2g0158 284 PRINTS Casein kinase II regulatory subunit family signature 244 261 IPR000704 GO:0005956|GO:0019887
Lja2g0158 284 SMART CK_II_beta_2 97 280 IPR000704 GO:0005956|GO:0019887
Lja2g0158 284 MobiDBLite consensus disorder prediction 1 94 - -
Lja2g0158 284 Gene3D - 195 269 - -
Lja2g0158 284 Pfam Casein kinase II regulatory subunit 97 280 IPR000704 GO:0005956|GO:0019887
Lja2g0158 284 ProSitePatterns Casein kinase II regulatory subunit signature. 198 229 IPR000704 GO:0005956|GO:0019887
Lja2g0158 284 PANTHER CASEIN KINASE II SUBUNIT BETA 1 283 IPR000704 GO:0005956|GO:0019887
Lja2g0158 284 SUPERFAMILY Casein kinase II beta subunit 95 283 IPR035991 GO:0005956|GO:0019887
Lja2g0158 284 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 90 194 IPR016149 GO:0005956|GO:0019887
Lja2g0158 284 PANTHER CASEIN KINASE II SUBUNIT BETA-2 1 283 - -
Lja2g0158 284 MobiDBLite consensus disorder prediction 16 30 - -
Lja2g0158 284 MobiDBLite consensus disorder prediction 31 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0158 Lja-Chr2 1290929 1294202 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0158 K03115 - gmx:100799304 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0158 2 1290929 1294202 Lja2g0158 2 1290929 1294202 ECH
Lja2g0158 2 1290929 1294202 Lja4g2630 4 35000943 35004504 PCT