Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2626 ATGGGCTGTTTCAACTCTAAGGCAAGAAAGCAGTTTCCAGGGCAAGAGGATCCAGTAATTCTTGCATCACAGACAGCTTTCACTGTCAGTGAGGTCGAAGCATTATTCGAGCTTTTTAAGAGCATAAGCAGCTCTGTTGTTGATGATGGATTAATAAGCAAGGAAGAATTTCAGTTGGCAATCTTCAAGAATAGGAAAAAAGAAAATATCTTCGCAAATCGGATCTTTGATCTATTTGATGTCAAGAAGAAGGGAGTTATTGATTTTGATGACTTTGTTAGATCTCTCAATGTCTTCCACCCAAATGCAGCGCTAGAAGACAAGATAGATTTTTCATTTAGGCTCTATGATTTGGACAGTACTGGCTTTATTGAACGCCAAGAGGTCAAGCAAATGTTAATTGCACTTCTTTGTGAGTCAGAAATGAAGTTGGCAGATGAGGTGGTAGAAACAATTATTGACAAGACATTCGTGGACGCTGACCAGAACCAAGATGGCAAAATTGACATTGACGAGTGGCGAAAGTTTGTTTCTGAAAATCCATCACTGCTGAAAATCATGACTCTTCCCTACTTAAGGGACATCACAACTTCTTTCCCAAGTTTTGTATTTAATTCTAACGTGGATGAAATTGTTGCTTGA 642 0.3879 MGCFNSKARKQFPGQEDPVILASQTAFTVSEVEALFELFKSISSSVVDDGLISKEEFQLAIFKNRKKENIFANRIFDLFDVKKKGVIDFDDFVRSLNVFHPNAALEDKIDFSFRLYDLDSTGFIERQEVKQMLIALLCESEMKLADEVVETIIDKTFVDADQNQDGKIDIDEWRKFVSENPSLLKIMTLPYLRDITTSFPSFVFNSNVDEIVA* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2626 213 PANTHER CALCINEURIN B-LIKE MOLECULE 1 212 - -
Lja4g2626 213 Gene3D - 18 211 - -
Lja4g2626 213 CDD EFh 108 178 IPR002048 GO:0005509
Lja4g2626 213 SUPERFAMILY EF-hand 21 202 IPR011992 -
Lja4g2626 213 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Lja4g2626 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Lja4g2626 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Lja4g2626 213 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Lja4g2626 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Lja4g2626 213 SMART efh_1 108 136 IPR002048 GO:0005509
Lja4g2626 213 SMART efh_1 152 180 IPR002048 GO:0005509
Lja4g2626 213 SMART efh_1 71 99 IPR002048 GO:0005509
Lja4g2626 213 PANTHER CALCINEURIN B 1 212 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lja4g2626 213 PRINTS Recoverin family signature 75 96 - -
Lja4g2626 213 PRINTS Recoverin family signature 122 140 - -
Lja4g2626 213 PRINTS Recoverin family signature 168 188 - -
Lja4g2626 213 Pfam EF-hand domain pair 107 177 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2626 Lja-Chr4 34945335 34951436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2626 1 213 EF-hand Containing Proteins AT4G17615 82.629 1.98e-129 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2626 K06268 - vvi:100260894 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0156 2 1278658 1282168 Lja4g2626 4 34945335 34951436 PCT