Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0156 ATGGGCTGTTTAAACTCTAAAACAGCCAGACGATATCCAGGCCAAGAAGATCCAGTAACTCTTGCGTCACAGACTGCTTTTAGCGTCAGTGACGTTGAAGCATTATTTGAGCTTTTCAAGAGCATTAGCAGGTCTGTCATTGACGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCAATTTTCAATAACAGTAAAAAGGAGAACCTCTTCACAAGTCGGATCTTTGATCTATTTGATGTCAAGGGGAGGGGTGTCATTGACTTTGGTGACTTTGTTAGAGCACTCAATGTCTTTCACCCAAATGCACCACTAGAAGTCAAGATAGATTTTTCATTTAGGCTCTATGATTTGGACAGTACAGGCTATATAGAGCGCGAAGAGGTAAAGCAAATGGTACATGCACTTCTTTGGGAGTCTGACATTAAGTTGACTGATGAAACAATAGAAACAATTCTTAACAAGACTTTCTTAGATGCTGACCCGAACCAAGATGGAAAGATAGACAAATCTGAGTGGCAAATTTTTGTTTCTGAAAATCCATCACTGTTAAAAATTATGACACTACCCTACCTGAGGGAGATAACAACAACTTTCCCAAGTTTTGTATTTAACTCGAAGGTGGATGATGACATTGCTGCTTGA 645 0.3922 MGCLNSKTARRYPGQEDPVTLASQTAFSVSDVEALFELFKSISRSVIDDGLISKEEFQLAIFNNSKKENLFTSRIFDLFDVKGRGVIDFGDFVRALNVFHPNAPLEVKIDFSFRLYDLDSTGYIEREEVKQMVHALLWESDIKLTDETIETILNKTFLDADPNQDGKIDKSEWQIFVSENPSLLKIMTLPYLREITTTFPSFVFNSKVDDDIAA* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0156 214 SUPERFAMILY EF-hand 21 203 IPR011992 -
Lja2g0156 214 PRINTS Recoverin family signature 168 188 - -
Lja2g0156 214 PRINTS Recoverin family signature 75 96 - -
Lja2g0156 214 PRINTS Recoverin family signature 122 140 - -
Lja2g0156 214 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Lja2g0156 214 SMART efh_1 108 136 IPR002048 GO:0005509
Lja2g0156 214 SMART efh_1 71 99 IPR002048 GO:0005509
Lja2g0156 214 SMART efh_1 152 180 IPR002048 GO:0005509
Lja2g0156 214 PANTHER CALCINEURIN B 1 213 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lja2g0156 214 Pfam EF-hand domain pair 108 176 IPR002048 GO:0005509
Lja2g0156 214 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Lja2g0156 214 Gene3D - 17 211 - -
Lja2g0156 214 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Lja2g0156 214 CDD EFh 108 174 IPR002048 GO:0005509
Lja2g0156 214 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Lja2g0156 214 PANTHER CALCINEURIN B-LIKE PROTEIN 1 213 - -
Lja2g0156 214 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0156 Lja-Chr2 1278658 1282168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0156 1 210 EF-hand Containing Proteins AT4G17615 75.714 3.90e-117 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0156 K06268 - vvi:100260894 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0156 2 1278658 1282168 Lja2g0156 2 1278658 1282168 ECH
Lja2g0156 2 1278658 1282168 Lja4g2626 4 34945335 34951436 PCT