Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2539 ATGCACAAAAGCTCTTCAGGCTCCACTCTAGGCCCAGGGGGCTTGGACCTAACCCAAACCTTCTTCAAACCCATCACCTACGCCGCCCCTCCCTCCCCCACCAAGCGCCACACCAAGATCTCCGTCATCGGCGCCGGCAACGTCGGCATGGCCATCGCTCAAACCGTCCTCACCCAAGACCTCACCGACGAGCTCTCCATCGTCGACAACAAACCCGACAAGCTCCGCGGCGAGATGCTCGACCTCCAGCACGCCGCCGCCTTCCTCCCTCGCACCCGGATCAACGCCTCTGTCGACTACTCTGTCACTGCCGGCTCCGATCTCTGCATCGTCACCGCCGGAGCTCGCCAGATCGCCGGCGAGTCCCGGCTCAACCTCCTGCAGAGGAACCTCTCCCTCTTCAAGCAGATCATACCCGCTCTGGTTCGTTACTCCCCGGACTGTGTCCTCATCATCGTTTCCAACCCCGTCGATGTCCTCACCTACGTCGCTTGGAAGCTCTCCGGGTTCCCACCCAACCGGGTCATCGGGTCGGGCACCAACCTTGACTCCTCTCGCTTCCGTTTCCTCATCGCCGATCATCTCGACGTCAACGCTCAGGACGTGCAGGCTTATATAGTGGGAGAACATGGGGATAGTTCTGTGGCGTTGTGGTCAAACATAAGTGTTGGGGGTGTTCCGGTGATGAGTTTTCTGGAGAAACAACAGATTGCGGTTGAAAAAGAGACGCTGGAGAATATACATAGGACAGTGATAGAGAGTGCTTATGAAGTTATCAGTCTGAAAGGGTACACTTCGTGGGCAATTGGGTACTCAGTGGCTAGCTTGGCGCGTTCAATTCTGAGGGACCAGAGGAAGATCGACCCGGTGTCTGTTCTGGCAAAAGGGTTTTACGGCATAGGTGATGCAGAAGTGTTCCTGAGCTTGCCTGCGCAGCTCGGGAGAGGAGGGGTGCTGGGTGTGACCAATGTGCACTTGAATGAAGAGGAAGAGCAGAGGCTCAGGGACTCTGCCAAGGCCATCCTTGAGGTGCAGTCTCAGTTGGAGATTTGA 1053 0.5698 MHKSSSGSTLGPGGLDLTQTFFKPITYAAPPSPTKRHTKISVIGAGNVGMAIAQTVLTQDLTDELSIVDNKPDKLRGEMLDLQHAAAFLPRTRINASVDYSVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKQIIPALVRYSPDCVLIIVSNPVDVLTYVAWKLSGFPPNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSNISVGGVPVMSFLEKQQIAVEKETLENIHRTVIESAYEVISLKGYTSWAIGYSVASLARSILRDQRKIDPVSVLAKGFYGIGDAEVFLSLPAQLGRGGVLGVTNVHLNEEEEQRLRDSAKAILEVQSQLEI* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2539 350 Hamap L-lactate dehydrogenase [ldh]. 37 349 IPR011304 GO:0004459|GO:0005737
Lja4g2539 350 Gene3D - 180 348 IPR015955 GO:0003824|GO:0016616
Lja4g2539 350 Coils Coil 327 347 - -
Lja4g2539 350 ProSitePatterns L-lactate dehydrogenase active site. 207 213 IPR018177 GO:0004459
Lja4g2539 350 Pfam lactate/malate dehydrogenase, NAD binding domain 38 177 IPR001236 GO:0016491
Lja4g2539 350 TIGRFAM L-LDH-NAD: L-lactate dehydrogenase 42 341 IPR011304 GO:0004459|GO:0005737
Lja4g2539 350 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 1 350 - -
Lja4g2539 350 Gene3D - 22 179 - -
Lja4g2539 350 SUPERFAMILY LDH C-terminal domain-like 178 347 IPR015955 GO:0003824|GO:0016616
Lja4g2539 350 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 180 341 IPR022383 GO:0016616
Lja4g2539 350 PANTHER L-LACTATE DEHYDROGENASE 1 350 - -
Lja4g2539 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 24 177 IPR036291 -
Lja4g2539 350 PIRSF Lac_mal_DH 34 350 IPR001557 GO:0016616|GO:0019752
Lja4g2539 350 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Lja4g2539 350 PRINTS L-lactate dehydrogenase signature 205 218 IPR001557 GO:0016616|GO:0019752
Lja4g2539 350 PRINTS L-lactate dehydrogenase signature 175 193 IPR001557 GO:0016616|GO:0019752
Lja4g2539 350 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Lja4g2539 350 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Lja4g2539 350 CDD LDH_1 35 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2539 Lja-Chr4 32175640 32177766 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2539 K00016 - cit:102614633 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2539 4 32175640 32177766 Lja4g2539 4 32175640 32177766 ECH
Lja2g0092 2 726939 727991 Lja4g2539 4 32175640 32177766 PCT