Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0092 ATGCACAAGAGCGAATCAAGTTCATCACTTGGGCCGGGTGGGTTAGACCTGACCCAGGCCTTTTTCAAGCCCATTCAGAACGCTGCCTCACCTTCTCCGACAAAGCGCAACACTAAAATCTCCGTCGTCGGAGCCGGCAACGTCGGAATGGCCATCGCCCAAACCATCCTCACCCAAGACCTCACCGACGAGCTCGTCCTCGTCGACGCTCTCCCAGACAAGGTCCGCGGCGAGATGCTCGACCTCCAGCACGCCGCCGCCTTCCTCCCCCGCACCAAGATCCTCTCCTCCACCGACTACTCCGTCACCGCCGGCTCTGACCTCTGCATTGTCACCGCCGGCGCCCGCCAGGTCAACGGCGAGTCCCGCCTCAACCTCCTCCAAAGAAACGTCGCCCTGTTCCAGAAAATCATACCCCCTCTCGTCCGTCACTCCCCTGACTCCATCCTCCTCATCGTTTCAAACCCCGTCGATGTCCTCACCTACATTGCTTGGAAACTCTCCGGTTTCCCCTCCAACCGCGCTTACATAGTGGGAGAACATGGTGACAGTTCGGTGGCGTTGTGGTCAAGCATCAGCGTCGGCGGCGTTCCGGTGCTGAGTTTTCTGGAGCAGCAGCAGATTGCTTACGAGAAGGACATGCTGGAGAACATTCACAAGGAGGTTATAGGAAGCGCTTACGAAGTGATAAGTCTGAAAGGGTACACTTCATGGGCGATAGGGTACTCGGTGGCGAGCTTGGCCCGGAGCATTATCAGGGACCAGAGGAAGATCCACCCGGTGTCGGTTCTAGCGAAGGGGTTTTACGAGATTGACGGCGGCGAAGTGTTTCTGAGCTTGCCGGCGCAGCTTGGAAGAGGAGGAGTGCTCGGTGTGACGAATGTGCACTTGACGGAAGAAGAGACACAGAGGCTCAGGGAATCTGCAAGGACCATCCTGGAGGTGCAGAATCAGTTGGGGATTTGA 966 0.5756 MHKSESSSSLGPGGLDLTQAFFKPIQNAASPSPTKRNTKISVVGAGNVGMAIAQTILTQDLTDELVLVDALPDKVRGEMLDLQHAAAFLPRTKILSSTDYSVTAGSDLCIVTAGARQVNGESRLNLLQRNVALFQKIIPPLVRHSPDSILLIVSNPVDVLTYIAWKLSGFPSNRAYIVGEHGDSSVALWSSISVGGVPVLSFLEQQQIAYEKDMLENIHKEVIGSAYEVISLKGYTSWAIGYSVASLARSIIRDQRKIHPVSVLAKGFYEIDGGEVFLSLPAQLGRGGVLGVTNVHLTEEETQRLRESARTILEVQNQLGI* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0092 321 CDD LDH_1 35 318 - -
Lja2g0092 321 Gene3D - 166 318 IPR015955 GO:0003824|GO:0016616
Lja2g0092 321 PANTHER L-LACTATE DEHYDROGENASE 1 175 - -
Lja2g0092 321 ProSitePatterns L-lactate dehydrogenase active site. 178 184 IPR018177 GO:0004459
Lja2g0092 321 Pfam lactate/malate dehydrogenase, NAD binding domain 38 174 IPR001236 GO:0016491
Lja2g0092 321 SUPERFAMILY LDH C-terminal domain-like 172 319 IPR015955 GO:0003824|GO:0016616
Lja2g0092 321 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Lja2g0092 321 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Lja2g0092 321 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Lja2g0092 321 PIRSF Lac_mal_DH 34 176 IPR001557 GO:0016616|GO:0019752
Lja2g0092 321 PIRSF Lac_mal_DH 171 321 IPR001557 GO:0016616|GO:0019752
Lja2g0092 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 174 IPR036291 -
Lja2g0092 321 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 172 314 IPR022383 GO:0016616
Lja2g0092 321 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 1 175 - -
Lja2g0092 321 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 175 321 - -
Lja2g0092 321 Gene3D - 38 165 - -
Lja2g0092 321 PANTHER L-LACTATE DEHYDROGENASE 175 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0092 Lja-Chr2 726939 727991 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0092 K00016 - gmx:100818856 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0092 2 726939 727991 Lja2g0092 2 726939 727991 ECH
Lja2g0092 2 726939 727991 Lja4g2539 4 32175640 32177766 PCT