Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2396 ATGAACAACAACAATCCAGCCAAGAATCCAGTGACGCCGTCGTTTCAGCTTCTCACCCAGTCTCAGCCTCAAATCCAAGGTGCTGTTCAGTTCCCTGGCCACTTTCAGCTTTCACAACCCCAAACCCATTTGATTGCACAACAAGCACAATATGCACAACCTCGTCTTCACCCTCAAATGCCGCCGCAGCAACAGCTGCAGTATCAGCAACAGCAGCAGCAGCAGCAACAGAAGCAACAACAGCATCAGTTACAGCAGCAGCAGAAGCCTGTTGGTCTATTGCATAACAGTGGCAACACCCATGTGGGCACTGCTGCTCCTGGAACTGCGAGTGCGAAGCGCGCGAATCAGAAGCCGCCTTCTCGCGGGCCTCAAGGTTCACCCAGTGCTAACCAATCGTCGGCATTTAAGACCATGGAGTTGACTCCGGCTCCTCTGAGGAGGAAGAGAAGCTACCCGGAGAAGCAAATTCCGGAAAGGGTGGCTAAGCTTGTGCCTGAGTGTGCTGTTTATACGAGGTTGCGTGAGCTCGAGGCGCAGATAGATGCTGCTTTGTTTAGGAAAAAGATTGATGTGCAGGAGGCTGTTAGAAACCCTACCTGTGTTCAGAAAACTATGCGTGTTTATGTGTATAATACCTTTTCAAATCAGAATAAAATGGATTCCGGGAAGAATGATGCAGAGGAGCCTTCTTGGTCCCTCAAGATAACGGGAAGGTTATTGGAAGATGGTAAGGATCCTGTGGTGGCAGGAGTTTCACAGAGGGAAAGTCCTCCGTGCCCTAAGTTTTCGGCTTTCTTCAAGAAAATTACCATATACTTGGATCAGGGCTTTTACCCAGATAATCATGTCATTGTTTGGGAAAGTGGCCGTTCGCCTAATCAACGAGATGGTTTTGAGGTGAAGAGGAAAGGAGATAAAGAGTTCACTGCAGTGATCAGACTAACGATGAATTATTCACCTGAGAAGTTCATGGTTTCGACACAACTGTCTAAAGTTTTGGGGATTGAGTTTGATACCCGCCCCAGGATAATAGCTGCACTTTGGCATTATGTGAAGTCCAAGAAGCTACAGAGCCCAAATGACCCTTCATTCTTCATGTGTGATGCTCCTCTTCAAAGGGTGTTCGGGGAAGAGAAAATGAAATTCTCCATGGCTTCACAAAAGATATCACAACATTTGTCTCTACCACAGCCTATACACCTGGAGCATAAACTCAAGTTTTCTGGAACTTGTCCCGTCGGAACTGCATGTTACGATATACAGGTTGATGTACCTCTTCCACTAGAGAAAGATATGTCTGCATTCTTGACAAGCATTGAGAGTCACAAAGAGATTGATAATTTTGATGAAGTGATTTGTTCTTCCATAAAGAAGATCCAAGGGCATCTTAGGAGGCGGGCATTCTTTCTTGGCTTTAGTCAGTCACCTGCAGAGTTTATAAATTCTTTGATCACCTCTCAGAGCAAGGATCTAAAGGTTGTTGCTGGTGATGCCAGCCATAGTGCTGATAATGAACGACGTTCTGAATTCTACAACCAATCTTGGGTTGAGGATGCTATCATTCGCTACCTGAGCCGGAAAACTGCTCGGAGTGATGCTCCTGGAAACATCTGA 1617 0.4632 MNNNNPAKNPVTPSFQLLTQSQPQIQGAVQFPGHFQLSQPQTHLIAQQAQYAQPRLHPQMPPQQQLQYQQQQQQQQQKQQQHQLQQQQKPVGLLHNSGNTHVGTAAPGTASAKRANQKPPSRGPQGSPSANQSSAFKTMELTPAPLRRKRSYPEKQIPERVAKLVPECAVYTRLRELEAQIDAALFRKKIDVQEAVRNPTCVQKTMRVYVYNTFSNQNKMDSGKNDAEEPSWSLKITGRLLEDGKDPVVAGVSQRESPPCPKFSAFFKKITIYLDQGFYPDNHVIVWESGRSPNQRDGFEVKRKGDKEFTAVIRLTMNYSPEKFMVSTQLSKVLGIEFDTRPRIIAALWHYVKSKKLQSPNDPSFFMCDAPLQRVFGEEKMKFSMASQKISQHLSLPQPIHLEHKLKFSGTCPVGTACYDIQVDVPLPLEKDMSAFLTSIESHKEIDNFDEVICSSIKKIQGHLRRRAFFLGFSQSPAEFINSLITSQSKDLKVVAGDASHSADNERRSEFYNQSWVEDAIIRYLSRKTARSDAPGNI* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2396 538 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 94 535 - -
Lja4g2396 538 CDD SWIB_like 326 394 - -
Lja4g2396 538 MobiDBLite consensus disorder prediction 48 154 - -
Lja4g2396 538 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 94 535 - -
Lja4g2396 538 MobiDBLite consensus disorder prediction 48 139 - -
Lja4g2396 538 SMART swib_2 320 399 IPR019835 -
Lja4g2396 538 SUPERFAMILY SWIB/MDM2 domain 314 404 IPR036885 -
Lja4g2396 538 Coils Coil 68 88 - -
Lja4g2396 538 ProSiteProfiles SWIB/MDM2 domain profile. 319 396 IPR003121 -
Lja4g2396 538 Gene3D SWIB/MDM2 domain 316 401 IPR036885 -
Lja4g2396 538 Pfam SWIB/MDM2 domain 323 394 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2396 Lja-Chr4 26834731 26838440 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lja4g2396 SWIB 1.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2396 K11650 - gmx:100790947 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5234 1 78344163 78346681 Lja4g2396 4 26834731 26838440 ECH
Lja4g2396 4 26834731 26838440 Lja4g2396 4 26834731 26838440 ECH