Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5234 ATGAATAACGATGGAAAGAATGTTGCTGCATCATCATCATTGTTTGGTCATTCTGGAACAGCCACACCGCCACAATGGAACCACACAACCAATTTTGTGTCTCGGTCAAACCCCCAAGCCCAATACCCTGGTCATTTTCAGCTTTCACAACCCCAACAATCGCAGCTGCTTGCGCAGGCTCAGTTTGCGCAAGCACGGGCACAATTGCAGTCTCAGGTAGTGCTTGCTCGTTTGCAATCTCAAGCTCAGATTGTTGAGAATTTACATAATGCTAATGCTAGTATGGCTAATGTTATGTCAACTCCGGCCCCTGGAAGCTCAAGGCGAGCAGCCCAAAAGCTGCCTTCACGGTTTTCCGGTTCATCCAGTACCAACCAATCCTTGCGGGCCTCGGCTGATGGGGGAAAGAAGAGGGAGTTCCTGGAGAAGCAAATACCGGAGAAGGTTGCTGCACTTCTGCCTGAGTCTGCTCTTTATACTCAGTTGCTTGATTTTGAGGCTATGATGGATGATGAGTTGGCCAGGAGAAAGATGGATGTACAGGAGGCTATTAGGTGCCCTCCCCATGTTCAGAAAACTCTTCGTATGTATGTGTTTAATACCTTCTCGAAGCGCACCAAAATGGATTGTGGGAATGAAAGTGCTGAGGAACCTTCTTGGTCTCTTAAGATAACTGGAAGGATATTGGAAGATGGTAAGGATACTGTGCCTGGAAATTTGCAGAGATCAAGTCCTCCGTGCCCGAAGTTCTGTGCTTTCTTCAAGAAAGTTACCATATGCTTGGATCAGAGCCTTTATCCCGAGAATCATGTCATTGTATGGGACAGTGCTCTCTCACCTAAGCAACATGATGGTTTTGAGGTGAGGAGGAAAGGAGATAAAGAATTCACTGCCGTGATCAGACTAGAAATGAATTATTCTCCGGAGAAGTATATGGTCTCAACAGAATTGTTTAAGCTTTTAGGGGTTCAGGTTGAGACTCGCCCAAAAATATTAGCTGCTCTTTGGCACTATGTGAAGTCCAGGAATCTACAGAGTCGAGATGACCCTTCATTTTTCATGTGTGATCCTTCTCTCCGAAGGTTGTTTGGGGAAGAAAAGATCAAATTCACCGTGGCAGCTCAGAAGTTGTTACCGCATCTGTCAAAACCACAGCCCATACAGTTGGAGCATAACATCAAGCTTTCTGGATATTGTCCAGGTGGAACTACATGTTACGATGTGCTGGTCGACGTGCCTTTTCCACTGGAGAATGAAGTGTCCGCATTTTTGGCTAGCACTGAGAGTCCAAAAGAGATGGAAGCTTTAGATGAGGTGATTTGTGCTTCCTTAAAGAAGATCCAGGAACATCGAAGGAGACGGGCTTCCTTTCTTAACTTTAGTCAGTCTCCAGCTGAGTATGTTAACACTTCGATTGCTTCTCAGAGCAAAGCTCTAAAACTTGTAGCTAGAGATGCCAGCTGTAATGCTGTAAAGGAACAGCGGTCTGAATTCTACAATAAACCATGGGTTGAGGATGCCGCCATTCGGTACTTGAACCGCAAAACTGCTGGAAGTGATACTCCTGGGGGCAACTAA 1578 0.4582 MNNDGKNVAASSSLFGHSGTATPPQWNHTTNFVSRSNPQAQYPGHFQLSQPQQSQLLAQAQFAQARAQLQSQVVLARLQSQAQIVENLHNANASMANVMSTPAPGSSRRAAQKLPSRFSGSSSTNQSLRASADGGKKREFLEKQIPEKVAALLPESALYTQLLDFEAMMDDELARRKMDVQEAIRCPPHVQKTLRMYVFNTFSKRTKMDCGNESAEEPSWSLKITGRILEDGKDTVPGNLQRSSPPCPKFCAFFKKVTICLDQSLYPENHVIVWDSALSPKQHDGFEVRRKGDKEFTAVIRLEMNYSPEKYMVSTELFKLLGVQVETRPKILAALWHYVKSRNLQSRDDPSFFMCDPSLRRLFGEEKIKFTVAAQKLLPHLSKPQPIQLEHNIKLSGYCPGGTTCYDVLVDVPFPLENEVSAFLASTESPKEMEALDEVICASLKKIQEHRRRRASFLNFSQSPAEYVNTSIASQSKALKLVARDASCNAVKEQRSEFYNKPWVEDAAIRYLNRKTAGSDTPGGN* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5234 525 MobiDBLite consensus disorder prediction 97 131 - -
Lja1g5234 525 SMART swib_2 307 386 IPR019835 -
Lja1g5234 525 CDD SWIB_like 313 381 - -
Lja1g5234 525 ProSiteProfiles SWIB/MDM2 domain profile. 306 383 IPR003121 -
Lja1g5234 525 SUPERFAMILY SWIB/MDM2 domain 301 391 IPR036885 -
Lja1g5234 525 Pfam SWIB/MDM2 domain 310 381 IPR003121 -
Lja1g5234 525 MobiDBLite consensus disorder prediction 97 139 - -
Lja1g5234 525 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 83 522 - -
Lja1g5234 525 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 83 522 - -
Lja1g5234 525 MobiDBLite consensus disorder prediction 1 45 - -
Lja1g5234 525 Gene3D SWIB/MDM2 domain 303 389 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5234 Lja-Chr1 78344163 78346681 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lja1g5234 SWIB 2.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5234 K11650 - gmx:100784907 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5234 1 78344163 78346681 Lja4g2396 4 26834731 26838440 ECH
Lja1g5234 1 78344163 78346681 Lja1g5234 1 78344163 78346681 ECH