Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2393 ATGATGAGGGACGCAGAATTTGAGCGTGTTCTGAGCTATTTCGACGAGGACGGCGACGGCAAGATTTCTCCCTCTGAGCTGAAGAGGCGGTTGGCGGTGATGGGCGGAGAGCTACGGTTGAAGGAGGCGGAGATGGCTATTGAGGCGTTTGATTCGGACGGCGACGGGTTTCTTTGTTTGGAGGATTTGGTGAAGCTGATGGAGTCAGCTGGTGAGGAGGAGAAGTTGAAGGATTTGAGGGAGGCTTTTGAGATGTATGACACGGAGAGGTGCGGTTTTATAACGCAGGAGAGTTTGAAGAGGATGTTGAAGAAGCTGGGGGATTTGAAGTCTATTGAAGAGTGTAAAGTGATGATTGATCGGTTTGATTTGAATGGGGATGGTGTGCTTAGCTTTGAAGAGTTCAGAGTTATGATGCAGTGA 423 0.4917 MMRDAEFERVLSYFDEDGDGKISPSELKRRLAVMGGELRLKEAEMAIEAFDSDGDGFLCLEDLVKLMESAGEEEKLKDLREAFEMYDTERCGFITQESLKRMLKKLGDLKSIEECKVMIDRFDLNGDGVLSFEEFRVMMQ* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2393 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Lja4g2393 140 CDD EFh 6 67 IPR002048 GO:0005509
Lja4g2393 140 Gene3D - 2 71 - -
Lja4g2393 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Lja4g2393 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 140 - -
Lja4g2393 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Lja4g2393 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Lja4g2393 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Lja4g2393 140 Pfam EF-hand domain pair 77 140 IPR002048 GO:0005509
Lja4g2393 140 Pfam EF-hand domain pair 9 68 IPR002048 GO:0005509
Lja4g2393 140 CDD EFh 78 140 IPR002048 GO:0005509
Lja4g2393 140 Gene3D - 72 140 - -
Lja4g2393 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Lja4g2393 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Lja4g2393 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 2 140 - -
Lja4g2393 140 SUPERFAMILY EF-hand 5 140 IPR011992 -
Lja4g2393 140 SMART efh_1 114 140 IPR002048 GO:0005509
Lja4g2393 140 SMART efh_1 6 34 IPR002048 GO:0005509
Lja4g2393 140 SMART efh_1 42 70 IPR002048 GO:0005509
Lja4g2393 140 SMART efh_1 78 106 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2393 Lja-Chr4 26812451 26813471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2393 3 140 EF-hand Containing Proteins AT1G76650 46.377 6.46e-35 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2393 K13448 - gmx:100816563 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5236 1 78446295 78447247 Lja4g2393 4 26812451 26813471 ECH
Lja4g2393 4 26812451 26813471 Lja4g2393 4 26812451 26813471 ECH