Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5236 ATGTGTTGCCATTGTAACATGAGGAAGGACGCCGGATTCGAGCATGTTCTTCGGTATTTTGATGAAGATGGAGATGGAAAGATTTCGCCTTCCGAGCTCAGGCAACGGTTGGGTGAGATGGGAGGGGAGCTTTTGCCGAGAGAAGCGGATATGGTGATTGAGGCGTTGGATTCGGACGGTGATGGGTTGCTAGGTTTGGAGGATTTTGTTACGTTGATGGAAGCTGGGGGATCAGAGGAGCAGAAGTTGAAGGACTTGAGAGAAGCTTTTGAGATGTATGATACTGACAAGAGTGGGTTTATAAGCCCCAAGAACTTGAAGAGGATGTTTAAGAAGATGGGGGAGTCCAAGTCCATTGATGAGTGCAAAGATATGATCAATCATTTTGATTTGAATGGGGATGGCGTGCTTAGCTTTGAAGAATTCCGAATCATGATGCAGTGA 444 0.4617 MCCHCNMRKDAGFEHVLRYFDEDGDGKISPSELRQRLGEMGGELLPREADMVIEALDSDGDGLLGLEDFVTLMEAGGSEEQKLKDLREAFEMYDTDKSGFISPKNLKRMFKKMGESKSIDECKDMINHFDLNGDGVLSFEEFRIMMQ* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5236 147 ProSitePatterns EF-hand calcium-binding domain. 57 69 IPR018247 -
Lja1g5236 147 ProSitePatterns EF-hand calcium-binding domain. 130 142 IPR018247 -
Lja1g5236 147 ProSiteProfiles EF-hand calcium-binding domain profile. 81 116 IPR002048 GO:0005509
Lja1g5236 147 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Lja1g5236 147 CDD EFh 13 73 IPR002048 GO:0005509
Lja1g5236 147 Gene3D - 77 147 - -
Lja1g5236 147 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 9 147 - -
Lja1g5236 147 SUPERFAMILY EF-hand 10 146 IPR011992 -
Lja1g5236 147 Pfam EF-hand domain pair 84 147 IPR002048 GO:0005509
Lja1g5236 147 Pfam EF-hand domain pair 17 74 IPR002048 GO:0005509
Lja1g5236 147 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Lja1g5236 147 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 9 147 - -
Lja1g5236 147 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Lja1g5236 147 ProSiteProfiles EF-hand calcium-binding domain profile. 117 147 IPR002048 GO:0005509
Lja1g5236 147 SMART efh_1 48 76 IPR002048 GO:0005509
Lja1g5236 147 SMART efh_1 12 40 IPR002048 GO:0005509
Lja1g5236 147 SMART efh_1 85 113 IPR002048 GO:0005509
Lja1g5236 147 SMART efh_1 121 147 IPR002048 GO:0005509
Lja1g5236 147 CDD EFh 85 147 IPR002048 GO:0005509
Lja1g5236 147 Gene3D - 6 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5236 Lja-Chr1 78446295 78447247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5236 9 147 EF-hand Containing Proteins AT1G76650 43.165 3.87e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5236 K13448 - gmx:100778709 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5236 1 78446295 78447247 Lja4g2393 4 26812451 26813471 ECH
Lja1g5236 1 78446295 78447247 Lja1g5236 1 78446295 78447247 ECH